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Sodium in PDB 3pws: Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate

Enzymatic activity of Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate

All present enzymatic activity of Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate:
1.2.1.11;

Protein crystallography data

The structure of Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate, PDB code: 3pws was solved by A.G.Pavlovsky, R.E.Viola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.73 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.082, 99.404, 64.612, 90.00, 101.14, 90.00
R / Rfree (%) 20.4 / 23.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate (pdb code 3pws). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate, PDB code: 3pws:

Sodium binding site 1 out of 1 in 3pws

Go back to Sodium Binding Sites List in 3pws
Sodium binding site 1 out of 1 in the Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Aspartate Beta-Semialdehide Dehydrogenase From Streptococcus Pneumoniae with 2',5'-Adenosine Diphosphate and D-2- Aminoadipate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na368

b:15.8
occ:1.00
 O A:ALA279 2.3 14.8 1.0
O A:PHE276 2.4 15.2 1.0
O A:ALA274 2.4 14.6 1.0
C A:PHE276 3.3 14.8 1.0
C A:ALA274 3.3 14.4 1.0
C A:ALA279 3.5 14.7 1.0
N A:PHE276 3.6 14.9 1.0
C A:ALA275 3.8 14.8 1.0
O A:ILE273 3.8 14.0 1.0
CA A:PHE276 4.0 14.9 1.0
N A:ALA279 4.0 14.5 1.0
N A:ALA275 4.1 14.5 1.0
N A:PRO277 4.1 14.7 1.0
CA A:ALA274 4.2 14.4 1.0
CA A:ALA279 4.2 14.6 1.0
CA A:ALA275 4.2 14.7 1.0
O A:ALA275 4.3 14.9 1.0
CA A:PRO277 4.4 14.5 1.0
CB A:ALA279 4.5 14.6 1.0
N A:VAL280 4.6 14.7 1.0
N A:GLY278 4.6 14.3 1.0
C A:PRO277 4.7 14.5 1.0
C A:ILE273 4.8 14.2 1.0
CA A:VAL280 4.8 14.8 1.0
CB A:PHE276 4.9 14.9 1.0
N A:ALA274 5.0 14.1 1.0

Reference:

A.G.Pavlovsky, X.Liu, C.R.Faehnle, N.Potente, R.E.Viola. Structural Characterization of Inhibitors with Selectivity Against Members of A Homologous Enzyme Family. Chem.Biol.Drug Des. V. 79 128 2012.
ISSN: ISSN 1747-0277
PubMed: 22039970
DOI: 10.1111/J.1747-0285.2011.01267.X
Page generated: Mon Oct 7 12:23:09 2024

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