Sodium in PDB, part 42 (files: 1641-1680),
PDB 2r25-2uyz
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 1641-1680 (PDB 2r25-2uyz).
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2r25 (Na: 1) - Complex of YPD1 and SLN1-R1 with Bound MG2+ and BEF3-
Other atoms:
F (3);
Mg (1);
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2r35 (Na: 1) - Crystal Structure of Rb Human Arg-Insulin
Other atoms:
Rb (1);
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2r36 (Na: 1) - Crystal Structure of Ni Human Arg-Insulin
Other atoms:
Ni (4);
Cl (1);
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2r37 (Na: 2) - Crystal Structure of Human Glutathione Peroxidase 3 (Selenocysteine to Glycine Mutant)
Other atoms:
Cl (2);
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2r5o (Na: 5) - Crystal Structure of the C-Terminal Domain of Wzt
Other atoms:
Cl (3);
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2r5p (Na: 1) - Crystal Structure Analysis of Hiv-1 Subtype C Protease Complexed with Indinavir
Other atoms:
Cl (4);
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2r84 (Na: 2) - Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp and Aicar
Other atoms:
Cl (2);
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2r85 (Na: 2) - Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp
Other atoms:
Cl (2);
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2r86 (Na: 2) - Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Atp
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2ra9 (Na: 1) - Crystal Structure of Protein of Unknown Function DUF1285 (YP_001050848.1) From Shewanella Baltica OS155 at 1.40 A Resolution
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2rdh (Na: 1) - Crystal Structure of Staphylococcal Superantigen-Like Protein 11
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2rdp (Na: 1) - The Structure of A Marr Family Protein From Bacillus Stearothermophilus
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2ret (Na: 2) - The Crystal Structure of A Binary Complex of Two Pseudopilins: Epsi and Epsj From the Type 2 Secretion System of Vibrio Vulnificus
Other atoms:
Cl (2);
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2rg8 (Na: 3) - Crystal Structure of Programmed For Cell Death 4 Middle MA3 Domain
Other atoms:
Cl (2);
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2rgi (Na: 3) - Crystal Structure of CA2+-Free S100A2 at 1.6 A Resolution
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2rh9 (Na: 1) - Tryptophan Synthase Complexed with Igp, Internal Aldimine, pH 9.0
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2rhg (Na: 1) - Tryptophan Synthase Complexed with Igp, pH 7.0, Internal Aldimine
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2rhj (Na: 1) - Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket
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2rht (Na: 1) - Crystal Structure of the S112A Mutant of A C-C Hydrolase, Bphd From Burkholderia Xenovorans LB400, in Complex with 3- Cl Hopda
Other atoms:
Cl (1);
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2rhw (Na: 1) - Crystal Structure of the S112A Mutant of A C-C Hydrolase, Bphd From Burkholderia Xenovorans LB400, in Complex with 3, 10-Di-Fluoro Hopda
Other atoms:
F (2);
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2ri0 (Na: 2) - Crystal Structure of Glucosamine 6-Phosphate Deaminase (Nagb) From S. Mutans
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2ri6 (Na: 1) - Crystal Structure of S112A Mutant of A C-C Hydrolase, Bphd From Burkholderia Xenovorans LB400
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2rk7 (Na: 2) - The Structure of Rat Cytosolic Pepck in Complex with Oxalate
Other atoms:
Mn (4);
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2rk8 (Na: 2) - The Structure of Rat Cytosolic Pepck in Complex with Phosphonoformate
Other atoms:
Mn (2);
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2rka (Na: 2) - The Structure of Rat Cytosolic Pepck in Complex with Phosphoglycolate
Other atoms:
Mn (4);
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2rkd (Na: 1) - The Structure of Rat Cytosolic Pepck in Complex with 3- Phosphonopropionate
Other atoms:
Mn (2);
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2rke (Na: 1) - The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate.
Other atoms:
Mn (2);
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2rtb (Na: 1) - Apostreptavidin, pH 3.32, Space Group I222
Other atoms:
Cl (3);
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2thf (Na: 1) - Structure of Human Alpha-Thrombin Y225F Mutant Bound to D- Phe-Pro-Arg-Chloromethylketone
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2trs (Na: 1) - Crystal Structures of Mutant (BETAK87T) Tryptophan Synthase ALPHA2 BETA2 Complex with Ligands Bound to the Active Sites of the Alpha and Beta Subunits Reveal Ligand-Induced Conformational Changes
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2tsy (Na: 1) - Crystal Structures of Mutant (BETAK87T) Tryptophan Synthase ALPHA2 BETA2 Complex with Ligands Bound to the Active Sites of the Alpha and Beta Subunits Reveal Ligand-Induced Conformational Changes
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2tys (Na: 1) - Crystal Structures of Mutant (BETAK87T) Tryptophan Synthase ALPHA2 BETA2 Complex with Ligands Bound to the Active Sites of the Alpha and Beta Subunits Reveal Ligand-Induced Conformational Changes
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2udp (Na: 1) - Udp-Galactose 4-Epimerase Complexed with Udp-Phenol
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2uuf (Na: 1) - Thrombin-Hirugen Binary Complex at 1.26A Resolution
Other atoms:
Ca (1);
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2uuj (Na: 1) - Thrombin-Hirugen-GW473178 Ternary Complex at 1.32A Resolution
Other atoms:
Ca (1);
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2uuk (Na: 1) - Thrombin-Hirugen-GW420128 Ternary Complex at 1.39A Resolution
Other atoms:
Ca (1);
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2uvm (Na: 1) - Structure of Pkbalpha pH Domain in Complex with A Novel Inositol Headgroup Surrogate, Benzene 1,2,3,4- Tetrakisphosphate
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2uw1 (Na: 2) - Ivy Desaturase Structure
Other atoms:
Fe (4);
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2ux9 (Na: 4) - Crystal Structure of the T. Thermophilus Dodecin R65A Mutant
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2uyz (Na: 1) - Non-Covalent Complex Between UBC9 and SUMO1
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