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Sodium in PDB 2rdp: The Structure of A Marr Family Protein From Bacillus Stearothermophilus

Protein crystallography data

The structure of The Structure of A Marr Family Protein From Bacillus Stearothermophilus, PDB code: 2rdp was solved by M.E.Cuff, E.Duggan, I.Dementieva, S.Moy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.10 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.643, 73.643, 90.432, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 25.3

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of A Marr Family Protein From Bacillus Stearothermophilus (pdb code 2rdp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of A Marr Family Protein From Bacillus Stearothermophilus, PDB code: 2rdp:

Sodium binding site 1 out of 1 in 2rdp

Go back to Sodium Binding Sites List in 2rdp
Sodium binding site 1 out of 1 in the The Structure of A Marr Family Protein From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of A Marr Family Protein From Bacillus Stearothermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na148

b:35.3
occ:1.00
O A:LEU32 2.6 55.1 1.0
O A:TYR35 2.6 57.2 1.0
O A:ILE37 2.7 57.4 1.0
C A:LEU32 3.6 54.7 1.0
C A:TYR35 3.8 56.7 1.0
C A:ILE37 3.9 57.2 1.0
O A:HOH195 4.0 57.4 1.0
N A:ILE37 4.1 57.7 1.0
CA A:THR33 4.2 54.6 1.0
N A:THR33 4.3 54.7 1.0
N A:TYR35 4.4 56.5 1.0
CB A:LEU32 4.4 54.5 1.0
C A:THR33 4.5 55.4 1.0
O A:THR33 4.6 56.2 1.0
CA A:LEU32 4.6 54.2 1.0
CA A:TYR35 4.6 56.2 1.0
C A:PRO36 4.7 57.7 1.0
CA A:ILE37 4.7 57.2 1.0
CA A:PRO36 4.7 57.4 1.0
N A:PRO36 4.7 57.0 1.0
N A:THR38 4.8 56.8 1.0
CA A:THR38 4.9 57.0 1.0

Reference:

M.E.Cuff, E.Duggan, I.Dementieva, S.Moy, A.Joachimiak. The Structure of A Marr Family Protein From Bacillus Stearothermophilus. To Be Published.
Page generated: Tue Dec 15 05:55:50 2020

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