Atomistry » Sodium » PDB 2r25-2uyz » 2rke
Atomistry »
  Sodium »
    PDB 2r25-2uyz »
      2rke »

Sodium in PDB 2rke: The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate.

Enzymatic activity of The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate.

All present enzymatic activity of The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate.:
4.1.1.32;

Protein crystallography data

The structure of The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate., PDB code: 2rke was solved by S.M.Sullivan, R.M.Stiffin, G.M.Carlson, T.Holyoak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.09 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.180, 119.031, 60.885, 90.00, 108.84, 90.00
R / Rfree (%) 20.3 / 24.9

Other elements in 2rke:

The structure of The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate. also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate. (pdb code 2rke). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate., PDB code: 2rke:

Sodium binding site 1 out of 1 in 2rke

Go back to Sodium Binding Sites List in 2rke
Sodium binding site 1 out of 1 in the The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Rat Cytosolic Pepck in Complex with Sulfoacetate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na702

b:17.5
occ:1.00
O A:HOH751 2.2 15.6 1.0
O A:ASN208 2.3 10.3 1.0
O A:HOH1037 2.3 18.3 1.0
O A:LEU79 2.4 10.8 1.0
O A:HOH1065 2.7 29.2 1.0
C A:LEU79 3.5 10.9 1.0
C A:ASN208 3.5 10.4 1.0
O A:VAL65 3.7 14.3 1.0
N A:LEU79 3.8 10.6 1.0
CA A:LEU79 4.1 10.6 1.0
CB A:ASN208 4.2 11.3 1.0
C A:ASN209 4.2 7.5 1.0
O A:ASN209 4.2 7.4 1.0
O A:GLY64 4.3 16.1 1.0
CB A:LEU79 4.3 10.6 1.0
CB A:ASN209 4.3 8.7 1.0
N A:ASN209 4.4 9.5 1.0
CA A:ASN208 4.4 11.2 1.0
CA A:ASN209 4.5 8.5 1.0
C A:VAL65 4.5 15.0 1.0
N A:THR80 4.6 10.8 1.0
N A:TRP210 4.6 6.5 1.0
CB A:TRP210 4.7 5.2 1.0
CA A:VAL65 4.7 15.2 1.0
CA A:THR80 4.9 11.2 1.0
C A:ALA78 4.9 10.4 1.0

Reference:

R.M.Stiffin, S.M.Sullivan, G.M.Carlson, T.Holyoak. Differential Inhibition of Cytosolic Pepck By Substrate Analogues. Kinetic and Structural Characterization of Inhibitor Recognition. Biochemistry V. 47 2099 2008.
ISSN: ISSN 0006-2960
PubMed: 18197707
DOI: 10.1021/BI7020662
Page generated: Tue Dec 15 05:56:01 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy