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Sodium in PDB 2uuf: Thrombin-Hirugen Binary Complex at 1.26A Resolution

Enzymatic activity of Thrombin-Hirugen Binary Complex at 1.26A Resolution

All present enzymatic activity of Thrombin-Hirugen Binary Complex at 1.26A Resolution:
3.4.21.5;

Protein crystallography data

The structure of Thrombin-Hirugen Binary Complex at 1.26A Resolution, PDB code: 2uuf was solved by H.U.Ahmed, M.P.Blakeley, M.Cianci, D.W.J.Cruickshank, J.A.Hubbard, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 1.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.275, 71.290, 72.037, 90.00, 99.90, 90.00
R / Rfree (%) 14.6 / 19.4

Other elements in 2uuf:

The structure of Thrombin-Hirugen Binary Complex at 1.26A Resolution also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Thrombin-Hirugen Binary Complex at 1.26A Resolution (pdb code 2uuf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Thrombin-Hirugen Binary Complex at 1.26A Resolution, PDB code: 2uuf:

Sodium binding site 1 out of 1 in 2uuf

Go back to Sodium Binding Sites List in 2uuf
Sodium binding site 1 out of 1 in the Thrombin-Hirugen Binary Complex at 1.26A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Thrombin-Hirugen Binary Complex at 1.26A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na2248

b:18.5
occ:1.00
O B:HOH1269 2.3 18.2 1.0
O B:ARG221 2.4 18.9 1.0
O B:HOH1237 2.4 16.6 1.0
O B:LYS224 2.4 17.1 1.0
O B:HOH1220 2.5 14.1 1.0
O B:HOH1221 2.7 17.8 1.0
C B:ARG221 3.4 21.9 1.0
C B:LYS224 3.4 15.4 1.0
N B:LYS224 3.9 17.4 1.0
O B:HOH1235 3.9 15.0 1.0
O B:HOH1272 3.9 21.7 1.0
N B:ARG221 3.9 20.0 1.0
O B:TYR184A 4.1 18.0 1.0
C B:ASP221A 4.1 18.7 1.0
CA B:LYS224 4.2 16.4 1.0
O B:HOH1223 4.2 15.3 1.0
N B:GLY223 4.3 20.8 1.0
N B:ASP222 4.3 23.0 1.0
CA B:ARG221 4.3 20.6 1.0
CA B:ASP222 4.3 23.1 1.0
CA B:ASP221A 4.4 18.0 1.0
N B:TYR225 4.4 15.2 1.0
C B:ASP222 4.5 22.2 1.0
O B:ASP221A 4.6 21.2 1.0
CB B:LYS224 4.6 17.4 1.0
OD1 B:ASP221A 4.6 19.8 1.0
CA B:TYR225 4.8 13.8 1.0
C B:GLY223 4.9 17.2 1.0
O B:HOH1264 4.9 19.9 1.0
O B:HOH1238 4.9 25.6 1.0

Reference:

H.U.Ahmed, M.P.Blakeley, M.Cianci, D.W.J.Cruickshank, J.A.Hubbard, J.R.Helliwell. The Determination of Protonation States in Proteins. Acta Crystallogr.,Sect.D V. 63 906 2007.
ISSN: ISSN 0907-4449
PubMed: 17642517
DOI: 10.1107/S0907444907029976
Page generated: Tue Dec 15 05:56:08 2020

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