Atomistry » Sodium » PDB 2r25-2uyz » 2rhj
Atomistry »
  Sodium »
    PDB 2r25-2uyz »
      2rhj »

Sodium in PDB 2rhj: Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket

Protein crystallography data

The structure of Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket, PDB code: 2rhj was solved by S.Lovell, Z.Halloran, K.Hjerrild, D.Sheridan, A.Burgin, L.Stewart, Accelerated Technologies Center For Gene To 3D Structure (Atcg3D), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.76
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.135, 82.062, 117.507, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 20.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket (pdb code 2rhj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket, PDB code: 2rhj:

Sodium binding site 1 out of 1 in 2rhj

Go back to Sodium Binding Sites List in 2rhj
Sodium binding site 1 out of 1 in the Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na337

b:40.9
occ:1.00
O A:HOH451 2.2 31.9 1.0
O4 A:SO42 2.3 41.6 1.0
O1 A:SO4336 2.8 35.2 1.0
O A:HOH344 3.2 18.7 1.0
S A:SO42 3.2 44.5 1.0
O3 A:SO42 3.2 46.7 1.0
N A:GLY110 3.5 16.9 1.0
O2 A:SO42 3.7 46.6 1.0
O A:HOH452 3.8 42.6 1.0
N A:THR109 3.9 19.2 1.0
CB A:THR109 4.0 18.2 1.0
N A:GLY21 4.0 20.7 1.0
S A:SO4336 4.1 34.3 1.0
CA A:GLY20 4.2 20.8 1.0
CA A:GLY107 4.2 21.0 1.0
CA A:GLY110 4.2 17.4 1.0
O A:HOH348 4.3 20.9 1.0
CA A:THR109 4.3 17.9 1.0
N A:GLY108 4.3 19.7 1.0
O A:HOH415 4.4 40.9 1.0
C A:THR109 4.4 18.0 1.0
O1 A:SO42 4.5 43.0 1.0
C A:GLY107 4.5 21.3 1.0
O2 A:SO4336 4.6 34.6 1.0
C A:GLY20 4.6 21.3 1.0
O4 A:SO4336 4.7 34.5 1.0
OG1 A:THR109 4.8 18.9 1.0
N A:GLY107 4.8 21.0 1.0
O A:GLY104 4.9 19.6 1.0
C A:GLY108 4.9 19.7 1.0

Reference:

A.Raymond, S.Lovell, D.Lorimer, J.Walchli, M.Mixon, E.Wallace, K.Thompkins, K.Archer, A.Burgin, L.Stewart. Combined Protein Construct and Synthetic Gene Engineering For Heterologous Protein Expression and Crystallization Using Gene Composer. Bmc Biotechnol. V. 9 37 2009.
ISSN: ESSN 1472-6750
PubMed: 19383143
DOI: 10.1186/1472-6750-9-37
Page generated: Mon Oct 7 04:21:53 2024

Last articles

Ca in 5NMR
Ca in 5NN9
Ca in 5NM8
Ca in 5NH8
Ca in 5NL7
Ca in 5NIN
Ca in 5NGQ
Ca in 5NH5
Ca in 5NGY
Ca in 5NG1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy