Sodium in the structure of Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket (pdb 2rhj)

The binding sites of Sodium atom in the structure of Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket (pdb code 2rhj). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2rhj structure was solved by S.LOVELL, Z.HALLORAN, K.HJERRILD, D.SHERIDAN, A.BURGIN, L.STEWART, ACCELERATED TECHNOLOGIES CENTER FOR GENE TO 3DSTRUCTURE (ATCG3D), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 50.0-1.8 Space group C2221 a (A) 74.135 b (A) 82.062 c (A) 117.507 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 18 Rfree (%) 20.8 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2rhj Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2rhj. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Gly20, A: Gly21, A: Gly104, A: Gly107, A: Gly108, A: Thr109, A: Gly110, A: So4336, A: So42, A: Hoh344, A: Hoh348, A: Hoh415, A: Hoh451, A: Hoh452, conact list: Atom Atom Distance (A) Na C A:Gly20 4.60 Na CA A:Gly20 4.17 Na N A:Gly21 4.05 Na O A:Gly104 4.86 Na N A:Gly107 4.83 Na C A:Gly107 4.51 Na CA A:Gly107 4.23 Na N A:Gly108 4.34 Na C A:Gly108 4.93 Na N A:Thr109 3.94 Na CB A:Thr109 4.03 Na OG1 A:Thr109 4.77 Na C A:Thr109 4.40 Na CA A:Thr109 4.33 Na N A:Gly110 3.48 Na CA A:Gly110 4.23 Na S A:So4336 4.14 Na O1 A:So4336 2.76 Na O2 A:So4336 4.56 Na O4 A:So4336 4.71 Na S A:So42 3.21 Na O1 A:So42 4.50 Na O2 A:So42 3.73 Na O4 A:So42 2.26 Na O3 A:So42 3.21 Na O A:Hoh344 3.19 Na O A:Hoh348 4.25 Na O A:Hoh415 4.39 Na O A:Hoh451 2.20 Na O A:Hoh452 3.81 interactive model: