Sodium in PDB 2rhj: Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket

The structure of Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket, PDB code: 2rhj was solved by S.Lovell, Z.Halloran, K.Hjerrild, D.Sheridan, A.Burgin, L.Stewart, Accelerated Technologies Center For Gene To 3D Structure (Atcg3D), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.76
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	74.135, 82.062, 117.507, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 20.8

The binding sites of Sodium atom in the Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket (pdb code 2rhj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket, PDB code: 2rhj:

Sodium binding site 1 out of 1 in the Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Synthetic Gene Encoded Bacillus Subtilis Ftsz with Two Sulfate Ions and Sodium Ion in the Nucleotide Pocket within 5.0Å range: probe atom residue distance (Å) B Occ A:Na337 b:40.9 occ:1.00 O A:HOH451 2.2 31.9 1.0 O4 A:SO42 2.3 41.6 1.0 O1 A:SO4336 2.8 35.2 1.0 O A:HOH344 3.2 18.7 1.0 S A:SO42 3.2 44.5 1.0 O3 A:SO42 3.2 46.7 1.0 N A:GLY110 3.5 16.9 1.0 O2 A:SO42 3.7 46.6 1.0 O A:HOH452 3.8 42.6 1.0 N A:THR109 3.9 19.2 1.0 CB A:THR109 4.0 18.2 1.0 N A:GLY21 4.0 20.7 1.0 S A:SO4336 4.1 34.3 1.0 CA A:GLY20 4.2 20.8 1.0 CA A:GLY107 4.2 21.0 1.0 CA A:GLY110 4.2 17.4 1.0 O A:HOH348 4.3 20.9 1.0 CA A:THR109 4.3 17.9 1.0 N A:GLY108 4.3 19.7 1.0 O A:HOH415 4.4 40.9 1.0 C A:THR109 4.4 18.0 1.0 O1 A:SO42 4.5 43.0 1.0 C A:GLY107 4.5 21.3 1.0 O2 A:SO4336 4.6 34.6 1.0 C A:GLY20 4.6 21.3 1.0 O4 A:SO4336 4.7 34.5 1.0 OG1 A:THR109 4.8 18.9 1.0 N A:GLY107 4.8 21.0 1.0 O A:GLY104 4.9 19.6 1.0 C A:GLY108 4.9 19.7 1.0

A.Raymond, S.Lovell, D.Lorimer, J.Walchli, M.Mixon, E.Wallace, K.Thompkins, K.Archer, A.Burgin, L.Stewart. Combined Protein Construct and Synthetic Gene Engineering For Heterologous Protein Expression and Crystallization Using Gene Composer. Bmc Biotechnol. V. 9 37 2009.
ISSN: ESSN 1472-6750
PubMed: 19383143
DOI: 10.1186/1472-6750-9-37