Sodium in PDB, part 231 (files: 9201-9240),
PDB 7c6l-7icu
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9201-9240 (PDB 7c6l-7icu).
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7c6l (Na: 1) - Crystal Structure of Beta-Glycosides-Binding Protein (W177X) of Abc Transporter in A Closed State Bound to Cellotriose (Form II)
Other atoms:
Cl (4);
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7c6o (Na: 1) - Catalytic Subunit of Cobaltochelatase From Mycobacterium Tuberculosis
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7c75 (Na: 1) - Crystal Structure of Yak Lactoperoxidase with Partially Coordinated Na Ion in the Distal Heme Cavity
Other atoms:
K (1);
Zn (1);
Fe (1);
Ca (1);
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7c90 (Na: 8) - Crystal Structure of Cytochrome Cl From the Marine Methylotrophic Bacterium Methylophaga Aminisulfidivorans Mpt (Ma-Cytcl)
Other atoms:
Fe (8);
Ca (4);
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7cc4 (Na: 1) - A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast Pseudozyma Antarctica
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7cfs (Na: 1) - Cryo-Em Strucutre of Human Acid-Sensing Ion Channel 1A at pH 8.0
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7ch1 (Na: 2) - The Overall Structure of SLC26A9
Other atoms:
Cl (4);
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7cjz (Na: 2) - Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography
Other atoms:
Cl (2);
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7clz (Na: 2) - Crystal Structure of ALP1U W187F/Y247F in Complex with Fluostatin C
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7cm8 (Na: 5) - High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae
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7cn7 (Na: 3) - T4 Phage Spackle Protein GP61.3 Complex with Lysozyme Domain of GP5 Tail Lysozyme
Other atoms:
Cl (1);
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7cuc (Na: 2) - Crystal Structure of Urate Oxidase From Bacillus Sp. Tb-90 in the Absence From Chloride Anion at 1.44 A Resolution
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7cuf (Na: 2) - Crystal Structure of Urate Oxidase From Bacillus Sp. Tb-90 in the Absence From Chloride Anion at 1.44 A Resolution
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7cug (Na: 1) - Crystal Structure of Urate Oxidase From Bacillus Sp. Tb-90 in the Absence From Chloride Anion at 1.62 A Resolution
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7cvj (Na: 1) - Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)
Other atoms:
Cl (2);
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7cvl (Na: 1) - Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (500 Ms)
Other atoms:
Cl (2);
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7cw1 (Na: 1) - Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).
Other atoms:
As (2);
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7cy3 (Na: 4) - Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9.
Other atoms:
As (4);
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7cy9 (Na: 4) - Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).
Other atoms:
As (3);
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7d3e (Na: 4) - Cryo-Em Structure of Human DUOX1-DUOXA1 in Low-Calcium State
Other atoms:
Fe (4);
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7d3f (Na: 4) - Cryo-Em Structure of Human DUOX1-DUOXA1 in High-Calcium State
Other atoms:
Fe (4);
Ca (4);
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7djq (Na: 3) - Crystal Structure of O-Acetyl L-Serine Sulfhydrylase From Haemophilus Influenzae in Complex with C-Terminal Peptide of Ribosomal S4 Domain Protein From Lactobacillus Salivarius.
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7gep (Na: 1) - Sulfite Reductase Hemoprotein in Complex with A Partially Oxidized Sulfide Species
Other atoms:
Fe (5);
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7ice (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CACL2
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7icf (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar) (Four-Day Soak)
Other atoms:
Cd (2);
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7icg (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CDCL2
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7ich (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of COCL2
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7ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CRCL3 (0.1 Millimolar)
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7icj (Na: 1) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CUCL2 (0.1 Millimolar)
Other atoms:
Cu (1);
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7ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of MGCL2
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7icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar)
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7icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (1.0 Millimolar)
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7icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of NICL2
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7ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
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7icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of ZNCL2 (0.01 Millimolar)
Other atoms:
Zn (2);
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7icq (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (1);
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7icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
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7ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
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7ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
Other atoms:
Zn (1);
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7icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
Other atoms:
Cd (1);
Page generated: Thu Dec 17 13:14:42 2020
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