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Sodium in PDB, part 231 (files: 9201-9240), PDB 6yd3-6yt4

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9201-9240 (PDB 6yd3-6yt4).
  1. 6yd3 (Na: 3) - X-Ray Structure of Furin in Complex with the Canavanine Derived Inhibitor 4-Guanidinomethyl-Phenylacetyl-Canavanine-Tle-Arg-Amba
    Other atoms: Cl (1); Ca (3);
  2. 6yd4 (Na: 3) - X-Ray Structure of Furin in Complex with the Canavanine-Based Inhibitor 4-Guanidinomethyl-Phenylacetyl-Canavanine-Tle-Canavanine- Amba
    Other atoms: Cl (1); Ca (3);
  3. 6yd7 (Na: 3) - X-Ray Structure of Furin in Complex with the Canavanine-Based Inhibitor 4-Guanidinomethyl-Phenylacetyl-Arg-Tle-Canavanine-Amba
    Other atoms: Cl (1); Ca (3);
  4. 6ydj (Na: 1) - P146A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in Complex with Glucose 6-Phosphate and Trifluoromagnesate
    Other atoms: F (3); Mg (2);
  5. 6yen (Na: 1) - Crystal Structure of Ampc From E. Coli with Taniborbactam (Vnrx-5133)
    Other atoms: Zn (2); Cl (3);
  6. 6yeo (Na: 1) - Crystal Structure of Ampc From E. Coli with Cyclic Boronate 2
    Other atoms: Cl (3);
  7. 6yev (Na: 4) - Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli
  8. 6yf2 (Na: 1) - FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution
    Other atoms: Cl (2); Cd (1);
  9. 6yf3 (Na: 1) - FKBP12 in Complex with the Bmp Potentiator Compound 10 at 1.00A Resolution
    Other atoms: Cl (2); Cd (1);
  10. 6yg1 (Na: 4) - Crystal Structure of MKK7 (MAP2K7) in An Active State, Allosterically Triggered By the N-Terminal Helix
  11. 6ygg (Na: 1) - Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue
    Other atoms: Ca (2);
  12. 6yhg (Na: 2) - Thrombin in Complex with D-Phe-Pro-M-Methoxybenzylamide Derivative (16A)
  13. 6yhj (Na: 2) - Thrombin in Complex with D-Phe-Pro-2-Chlorothiophen Derivative (16E)
    Other atoms: Cl (2);
  14. 6yhn (Na: 2) - Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis
    Other atoms: Mg (4); Cl (1);
  15. 6yia (Na: 1) - 14-3-3 Sigma in Complex with SMAD2 PS465 Peptide
    Other atoms: Cl (1); Mg (5); Ca (1);
  16. 6yib (Na: 1) - 14-3-3 Sigma in Complex with SMAD3 PS423 Peptide
    Other atoms: Ca (1); Cl (3); Mg (3);
  17. 6yic (Na: 2) - 14-3-3 Sigma in Complex with SMAD4 PS403 Peptide
    Other atoms: Mg (2); Ca (1);
  18. 6yig (Na: 1) - Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1
    Other atoms: Ca (1);
  19. 6yii (Na: 3) - Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa
    Other atoms: Mg (1); Mn (1); Ca (1);
  20. 6yjx (Na: 1) - Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide
    Other atoms: Cl (4);
  21. 6yl5 (Na: 14) - Crystal Structure of the Sam-Sah Riboswitch with Sah
    Other atoms: Mg (5); Br (6);
  22. 6yls (Na: 1) - MEOS4B - Directionality of Optical Properties of Fluorescent Proteins
    Other atoms: Cl (1);
  23. 6ymd (Na: 2) - Crystal Structure of Serine Hydroxymethyltransferase From Aphanothece Halophytica in the Covalent Complex with Malonate
  24. 6ymj (Na: 3) - Crystal Structure of the Sam-Sah Riboswitch with Adenosine
    Other atoms: Br (6); Mg (1);
  25. 6ymk (Na: 2) - Crystal Structure of the Sam-Sah Riboswitch with Amp
    Other atoms: Br (6);
  26. 6ymm (Na: 1) - Crystal Structure of the Sam-Sah Riboswitch with Sam From Space Group P312
    Other atoms: Br (2);
  27. 6ymp (Na: 2) - Thrombin in Complex with 3-((5-(Tert-Butyl)Isoxazol-3-Yl)Methyl) Oxetan-3-Amine (J54)
  28. 6ymz (Na: 8) - Structure of the Cheb Methylsterase From P. Atrosepticum SCRI1043
  29. 6yn3 (Na: 2) - Thrombin in Complex with 4-Hydroxybenzamide (J89)
  30. 6yob (Na: 1) - Structure of Lysozyme From Coc Imisx Setup Collected By Rotation Serial Crystallography on Crystals Prelocated By 2D X-Ray Phase- Contrast Imaging
    Other atoms: Br (7);
  31. 6yoc (Na: 1) - Structure of Lysozyme From Coc Imisx Setup Collected By Still Serial Crystallography on Crystals Prelocated By 2D X-Ray Phase-Contrast Imaging
    Other atoms: Br (7);
  32. 6yod (Na: 1) - Structure of Lysozyme From Sin Imisx Setup Collected By Rotation Serial Crystallography on Crystals Prelocated By 2D X-Ray Phase- Contrast Imaging
    Other atoms: Br (7);
  33. 6yoe (Na: 1) - Structure of Lysozyme From Sin Imisx Setup Collected By Still Serial Crystallography on Crystals Prelocated By 2D X-Ray Phase-Contrast Imaging
    Other atoms: Br (7);
  34. 6yq1 (Na: 1) - Focal Adhesion Kinase Catalytic Domain in Complex with N-Methyl-N-(3- {[2-(2-Oxo-1,2,3,4-Tetrahydro-Quinolin-6-Ylamino)-5-Trifluoromethyl- Pyrimidin-4-Ylamino]-Methyl}-Pyridin-2-Yl)-Methanesulfonamide
    Other atoms: F (12);
  35. 6yqq (Na: 1) - Fort-Prpp Complex
    Other atoms: Cl (1);
  36. 6yqv (Na: 2) - Thrombin in Complex with 5-Chlorothiophene-2-Sulfonamide (J94)
    Other atoms: Cl (1);
  37. 6yro (Na: 3) - Streptococcus Suis Sadp Mutant - N285D
  38. 6ysj (Na: 2) - Thrombin in Complex with 2-Amino-1-(4-Bromophenyl)Ethan-1-One (J10)
    Other atoms: Br (2);
  39. 6ysx (Na: 2) - Thrombin in Complex with 4-Amino-N-(5-Methylisoxazol-3-Yl) Benzenesulfonamide (J80)
  40. 6yt4 (Na: 5) - Crystal Structure of the N112A Mutant of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
Page generated: Sat Sep 25 14:52:27 2021

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