Sodium in PDB 6ygg: Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue

The structure of Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue, PDB code: 6ygg was solved by O.Stromland, M.Ziegler, J.P.Kallio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.66 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.050, 64.318, 161.007, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 22.6

The structure of Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Sodium atom in the Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue (pdb code 6ygg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue, PDB code: 6ygg:

Sodium binding site 1 out of 1 in the Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue within 5.0Å range: probe atom residue distance (Å) B Occ A:Na308 b:38.8 occ:1.00 O A:TRP34 2.3 40.3 1.0 O A:HOH558 2.5 33.5 1.0 O A:ARG32 2.5 30.6 1.0 O A:HOH489 2.7 41.2 1.0 C A:TRP34 3.5 37.6 1.0 C A:ARG32 3.6 32.7 1.0 O A:HOH627 4.2 43.0 1.0 CD A:PRO35 4.2 33.0 1.0 N A:TRP34 4.2 31.8 1.0 C A:CYS33 4.3 27.3 1.0 CA A:ARG32 4.3 30.2 1.0 N A:PRO35 4.4 35.9 1.0 O A:CYS33 4.5 32.3 1.0 CA A:TRP34 4.5 36.6 1.0 N A:CYS33 4.5 24.1 1.0 O A:ALA31 4.7 28.5 1.0 CA A:CYS33 4.7 22.8 1.0 CG A:ARG32 4.8 29.3 1.0

O.Stromland, J.P.Kallio, A.Pschibul, R.Skoge, H.M.Hardardottir, L.J.Sverkeli, T.Heinekamp, M.Migaud, T.I.Gossmann, A.Brakhage, M.Ziegler. Conidial Nadases - A New Protein Family in Pathogenic Fungi To Be Published.