Sodium in PDB 6yqq: Fort-Prpp Complex

The structure of Fort-Prpp Complex, PDB code: 6yqq was solved by J.H.Naismith, S.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	65.47 / 2.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	81.084, 81.084, 110.975, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 26.5

The structure of Fort-Prpp Complex also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Fort-Prpp Complex (pdb code 6yqq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Fort-Prpp Complex, PDB code: 6yqq:

Sodium binding site 1 out of 1 in the Fort-Prpp Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Fort-Prpp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:73.5 occ:1.00 O A:VAL287 2.3 0.1 1.0 O A:ALA284 2.4 1.0 1.0 O A:ARG282 2.8 0.4 1.0 O A:GLY281 2.9 0.9 1.0 C A:VAL287 3.5 0.7 1.0 C A:ALA284 3.5 0.6 1.0 C A:ARG282 3.5 0.7 1.0 CA A:ARG282 3.9 0.9 1.0 C A:GLY281 4.0 0.9 1.0 N A:ALA284 4.2 0.3 1.0 CA A:PRO285 4.3 0.0 1.0 N A:PRO285 4.3 0.7 1.0 C A:ALA283 4.3 0.5 1.0 CA A:VAL287 4.3 0.5 1.0 CB A:VAL287 4.4 0.3 1.0 N A:VAL287 4.4 0.5 1.0 CA A:ALA284 4.4 0.2 1.0 O A:ALA283 4.4 0.3 1.0 N A:ARG282 4.4 0.6 1.0 N A:ASP288 4.4 0.8 1.0 N A:ALA283 4.5 0.7 1.0 CA A:ASP288 4.6 0.9 1.0 C A:PRO285 4.7 0.1 1.0 CG1 A:VAL287 4.8 0.7 1.0 CA A:ALA283 4.9 0.4 1.0 C A:ASP288 4.9 0.6 1.0 O A:PRO285 5.0 0.5 1.0 CB A:ALA284 5.0 0.6 1.0

J.H.Naismith, S.Gao. Fort, A C-C Bond Forming Protein To Be Published.