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Sodium in PDB 6yf2: FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution

Enzymatic activity of FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution

All present enzymatic activity of FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution:
5.2.1.8;

Protein crystallography data

The structure of FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution, PDB code: 6yf2 was solved by J.Kallen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.77 / 1.03
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.482, 57.482, 54.469, 90, 90, 90
R / Rfree (%) 14.1 / 14.9

Other elements in 6yf2:

The structure of FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Cadmium (Cd) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution (pdb code 6yf2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution, PDB code: 6yf2:

Sodium binding site 1 out of 1 in 6yf2

Go back to Sodium Binding Sites List in 6yf2
Sodium binding site 1 out of 1 in the FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of FKBP12 in Complex with the Bmp Potentiator Compound 6 at 1.03A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:22.7
occ:0.50
 O A:HOH437 3.0 13.1 1.0
OE1 A:GLU54 3.1 6.5 1.0
O A:HOH371 3.1 14.7 1.0
O A:HOH411 3.5 8.8 1.0
O A:HOH381 3.7 15.3 1.0
CD A:GLU54 4.2 6.1 1.0
CB A:GLU54 4.2 7.0 1.0
O49 A:OP5201 4.4 8.4 1.0
CD A:CD202 4.4 6.3 1.0
O A:HOH350 4.6 7.7 1.0
O A:HOH355 4.7 10.1 1.0
CG A:GLU54 4.8 6.7 1.0
C38 A:OP5201 4.9 8.5 1.0

Reference:

M.H.Larraufie, X.Gao, X.Xia, P.J.Devine, D.Liu, A.Harsch, J.Kallen, N.Savage, J.Ding, K.Tan, M.Mihalic, P.Krastel, G.Michaud, M.Salcius, A.Izaac, J.Gao, F.Harbinski, S.Roggo, S.Canham, S.Bushell, E.Altinoglu, P.Lustenberger, E.Williams, C.Fryer, F.Cong, L.Klickstein, J.Tallarico, R.Jain, D.M.Rothman, S.Wang. Phenotypic Screen Identifies Calcineurin-Sparing FK506 Analogues As Bmp Potentiators For Treatment of Acute Kidney Injury Cell Chem Biol 2021.
ISSN: ESSN 2451-9456
Page generated: Tue Oct 8 15:07:13 2024

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