Sodium in PDB 6yig: Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1

The structure of Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1, PDB code: 6yig was solved by K.Yperman, R.Merceron, S.De Munck, Y.Bloch, S.N.Savvides, R.Pleskot, D.Vandamme, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.00 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.51, 38.62, 63.52, 90, 90, 90
R / Rfree (%)	14.5 / 16.4

The structure of Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1 also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Sodium atom in the Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1 (pdb code 6yig). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1, PDB code: 6yig:

Sodium binding site 1 out of 1 in the Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the N-Terminal Ef-Hand Domain of Arabidopsis Thaliana ATEH1/PAN1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:26.1 occ:1.00 HG A:SER57 1.8 31.9 1.0 HG A:SER55 1.9 38.8 1.0 O A:PHE59 2.3 20.1 1.0 O A:HOH315 2.3 36.3 1.0 OD1 A:ASP53 2.3 22.2 1.0 OG A:SER57 2.3 26.6 1.0 OG A:SER55 2.6 32.3 1.0 O A:HOH342 2.6 34.9 1.0 H A:SER57 2.9 31.6 1.0 H A:PHE59 3.2 20.4 1.0 H A:SER55 3.4 37.1 1.0 C A:PHE59 3.5 16.1 1.0 CG A:ASP53 3.5 22.8 1.0 CB A:SER57 3.5 29.6 1.0 HB3 A:SER57 3.5 35.6 1.0 HA A:ASP53 3.7 22.3 1.0 N A:SER57 3.7 26.3 1.0 CB A:SER55 3.8 32.6 1.0 HB3 A:SER55 3.9 39.1 1.0 N A:PHE59 3.9 17.0 1.0 HA A:LEU60 4.0 15.8 1.0 H A:GLY58 4.0 26.1 1.0 HB2 A:PHE59 4.1 20.2 1.0 H A:HIS56 4.1 35.5 1.0 CA A:SER57 4.1 28.7 1.0 N A:SER55 4.1 30.9 1.0 OD1 A:ASN64 4.1 29.9 1.0 OD2 A:ASP53 4.2 24.1 1.0 HB2 A:SER57 4.2 35.6 1.0 CA A:PHE59 4.2 16.6 1.0 HD23 A:LEU60 4.3 21.8 1.0 O A:HOH371 4.3 33.6 1.0 N A:HIS56 4.3 29.5 1.0 CA A:SER55 4.3 31.4 1.0 CA A:ASP53 4.4 18.6 1.0 N A:GLY58 4.4 21.7 1.0 CB A:ASP53 4.5 20.9 1.0 N A:LEU60 4.5 13.8 1.0 HB2 A:SER55 4.5 39.1 1.0 C A:SER55 4.5 28.9 1.0 C A:SER57 4.6 23.1 1.0 C A:ASP53 4.6 23.4 1.0 H A:ARG54 4.6 29.2 1.0 O A:HOH347 4.6 37.8 1.0 CA A:LEU60 4.7 13.2 1.0 CB A:PHE59 4.7 16.9 1.0 N A:ARG54 4.7 24.3 1.0 H A:ASP61 4.7 18.4 1.0 HB2 A:ASP53 4.8 25.1 1.0 C A:HIS56 4.8 32.2 1.0 HA A:SER57 5.0 34.4 1.0

K.Yperman, A.Papageorgiou, R.Merceron, S.De Munck, Y.Bloch, D.Eeckhout, P.Tack, T.Evangelidis, J.Van Leene, L.Vincze, M.Potocky, G.De Jaeger, S.N.Savvides, K.Tripsianes, R.Pleskot, D.Van Damme. Distinct Eh Domains of the Endocytic Tplate Complex Confer Lipid and Protein Binding. To Be Published.