Sodium in PDB 6yev: Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli

All present enzymatic activity of Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli:
1.8.4.11;

The structure of Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli, PDB code: 6yev was solved by S.Napolitano, D.Zyla, R.Glockshuber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.71 / 2.94
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	139.91, 139.91, 218.05, 90, 90, 120
R / Rfree (%)	22.9 / 25.8

The binding sites of Sodium atom in the Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli (pdb code 6yev). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli, PDB code: 6yev:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:73.8 occ:1.00 OH A:TYR82 2.7 82.2 1.0 OE2 A:GLU94 3.2 69.4 1.0 OH A:TYR134 3.5 71.8 1.0 OE1 A:GLU94 3.6 65.7 1.0 CZ A:TYR82 3.8 80.2 1.0 CD A:GLU94 3.8 67.8 1.0 CE1 A:TYR82 4.0 80.1 1.0 CB A:ALA51 4.1 73.8 1.0 CE1 A:TYR134 4.2 70.4 1.0 CZ A:TYR134 4.3 70.6 1.0 CA A:ALA51 4.5 73.0 1.0 CD1 A:PHE52 4.8 68.2 1.0 CE1 A:PHE52 4.8 67.3 1.0 N A:PHE52 4.9 71.4 1.0 CE2 A:TRP53 4.9 68.2 1.0 CZ2 A:TRP53 5.0 68.0 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:81.4 occ:1.00 OH B:TYR82 2.4 90.6 1.0 CZ B:TYR82 3.4 87.5 1.0 OE2 B:GLU94 3.4 74.9 1.0 CE1 B:TYR82 3.6 83.9 1.0 OE1 B:GLU94 3.6 74.5 1.0 CD B:GLU94 3.9 71.1 1.0 CE1 B:PHE52 3.9 79.3 1.0 OH B:TYR134 4.1 76.0 1.0 CD1 B:PHE52 4.2 80.0 1.0 CB B:ALA51 4.4 75.4 1.0 CE2 B:TRP53 4.5 82.3 1.0 CE2 B:TYR82 4.5 85.7 1.0 NE1 B:TRP53 4.7 84.2 1.0 CZ2 B:TRP53 4.7 81.0 1.0 CE1 B:TYR134 4.7 68.1 1.0 CA B:ALA51 4.8 74.9 1.0 CD2 B:TRP53 4.9 81.2 1.0 N B:PHE52 4.9 72.1 1.0 CZ B:TYR134 4.9 71.5 1.0 CD1 B:TYR82 5.0 80.6 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ C:Na301 b:71.3 occ:1.00 OH C:TYR82 3.2 74.0 1.0 OE1 C:GLU94 3.4 77.4 1.0 CE1 C:PHE52 3.6 86.8 1.0 CD1 C:PHE52 3.6 84.9 1.0 CB C:ALA51 4.0 66.5 1.0 OE2 C:GLU94 4.1 76.6 1.0 CE2 C:TRP53 4.1 70.4 1.0 CD2 C:TRP53 4.1 71.1 1.0 N C:PHE52 4.1 65.7 1.0 CD C:GLU94 4.1 75.8 1.0 CZ C:TYR82 4.1 71.3 1.0 CE1 C:TYR82 4.2 67.3 1.0 NE1 C:TRP53 4.3 69.5 1.0 CA C:ALA51 4.4 67.1 1.0 CG C:TRP53 4.4 71.4 1.0 CZ2 C:TRP53 4.5 69.3 1.0 CD1 C:TRP53 4.5 68.8 1.0 CE3 C:TRP53 4.5 71.5 1.0 C C:ALA51 4.6 67.4 1.0 OH C:TYR134 4.7 72.6 1.0 N C:TRP53 4.7 69.2 1.0 CE1 C:TYR134 4.8 68.0 1.0 CH2 C:TRP53 4.8 70.3 1.0 CZ3 C:TRP53 4.8 69.3 1.0 CG C:PHE52 4.9 79.6 1.0 CZ C:PHE52 4.9 85.3 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Msra C206 and Trx C35S Complex From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ D:Na301 b:90.5 occ:1.00 OH D:TYR82 3.3 115.6 1.0 OE1 D:GLU94 3.5 98.2 1.0 OE2 D:GLU94 3.8 99.0 1.0 CB D:ALA51 3.8 119.7 1.0 CD D:GLU94 4.1 98.7 1.0 OH D:TYR134 4.1 106.7 1.0 CZ D:TYR82 4.2 113.2 1.0 CE1 D:TYR82 4.3 111.1 1.0 CE2 D:TRP53 4.4 110.0 1.0 CA D:ALA51 4.4 118.7 1.0 CE1 D:TYR134 4.4 107.4 1.0 CD2 D:TRP53 4.5 111.5 1.0 CZ2 D:TRP53 4.6 111.6 1.0 NE1 D:TRP53 4.6 106.2 1.0 N D:PHE52 4.7 113.3 1.0 CZ D:TYR134 4.8 107.9 1.0 CG D:TRP53 4.8 109.3 1.0 CE3 D:TRP53 4.8 113.1 1.0 CD1 D:TRP53 4.9 106.5 1.0 C D:ALA51 4.9 117.1 1.0 CH2 D:TRP53 4.9 112.7 1.0

S.Napolitano, D.Zyla, R.Glockshuber. Structure of A Complex Between the Single-Cysteine Mutant Msra C206 and Trx C35S From Escherichia Coli To Be Published.