Atomistry » Sodium » PDB 6ozf-6ph5
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Sodium in PDB, part 211 (files: 8401-8440), PDB 6ozf-6ph5

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8401-8440 (PDB 6ozf-6ph5).
  1. 6ozf (Na: 2) - Crystal Structure of Thermotoga Maritima (Tm) Endonuclease V (D110N) in Complex with A 12MER Dna Containing An Inosine Followed By A Ribo- Adenosine
    Other atoms: Ca (4);
  2. 6ozl (Na: 1) - Crystal Structure of Mus Musculus (Mm) Endonuclease V in Complex with A 23MER Rna Oligo Containing An Inosine After A 2 Min Soak in MN2+
    Other atoms: Mn (4);
  3. 6ozs (Na: 2) - Crystal Structure of Mus Musculus (Mm) Endonuclease V in Complex with A 23MER Rna Oligo Containing An Inosine After A 90 Min Soak in 10 Mm MG2+
    Other atoms: Mg (6);
  4. 6p0c (Na: 1) - Human Dna Ligase 1 Bound to An Adenylated, Hydroxyl Terminated Dna Nick in Edta
  5. 6p0i (Na: 1) - Crystal Structure of Gdp-Bound Human Rala in A Covalent Complex with Aryl Sulfonyl Fluoride Compounds.
    Other atoms: Ca (1); Cl (3);
  6. 6p1n (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Dampnpp
    Other atoms: Mg (2); Cl (2);
  7. 6p1o (Na: 1) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Damp
    Other atoms: Mg (1); Mn (1); Cl (3);
  8. 6p1p (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Dcmpnpp
    Other atoms: Mg (2); Cl (1);
  9. 6p1q (Na: 1) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Dcmp
    Other atoms: Mg (2); Cl (3);
  10. 6p1r (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Ampnpp
    Other atoms: Mg (2); Cl (3);
  11. 6p1s (Na: 2) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Amp
    Other atoms: Mn (1); Cl (2);
  12. 6p1t (Na: 2) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Cmpcpp
    Other atoms: Mg (2); Cl (3);
  13. 6p1u (Na: 3) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Cmp
    Other atoms: Mn (1); Cl (4);
  14. 6p1v (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Undamaged Template Dg and Bound Incoming Dcmpnpp
    Other atoms: Mg (2); Cl (3);
  15. 6p1w (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Undamaged Template Dg and Bound Incoming Cmpcpp
    Other atoms: Mg (2); Cl (4);
  16. 6p2t (Na: 1) - Bshb From Bacillus Subtilis Complexed with Citrate
    Other atoms: Zn (1);
  17. 6p3j (Na: 1) - Crystal Structure of Ligu
    Other atoms: Cl (9); Ca (2);
  18. 6p4d (Na: 1) - Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R
    Other atoms: Cl (4);
  19. 6p4e (Na: 2) - Leishmania Mexicana Cpb in Complex with An Aza-Nitrile Inhibitor
  20. 6p5o (Na: 1) - The Structure of Rat Cytosolic Pepck in Complex with 3- (Carboxymethylthiol)-Picolinic Acid
    Other atoms: Mn (2);
  21. 6p8k (Na: 4) - Escherichia Coli Bacterioferritin Substituted with Zinc Protoporphyrin IX
    Other atoms: Zn (24);
  22. 6p8l (Na: 4) - Escherichia Coli Bacterioferritin Substituted with Zinc Protoporphyrin IX (Zn Absorption Edge X-Ray Data)
    Other atoms: Zn (24);
  23. 6p8m (Na: 4) - Crystal Structure of Antibody P-P3B3 A60C Heavy Chain in Complex with 426C Hiv-1 GP120 Core G459C
    Other atoms: Cl (1);
  24. 6p9k (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with O6G
  25. 6p9l (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx
    Other atoms: F (1);
  26. 6p9m (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with O6J
  27. 6pa0 (Na: 1) - Structure of the G77A Mutant in Sodium Chloride
  28. 6pbc (Na: 1) - Structural Basis For the Activation of Plc-Gamma Isozymes By Phosphorylation and Cancer-Associated Mutations
    Other atoms: Ca (1);
  29. 6pbk (Na: 3) - Archaellum Periplasmic Stator Protein Complex Flaf and Flag From Sulfolobus Acidocaldarius
  30. 6pbr (Na: 6) - Catalytic Domain of E.Coli Dihydrolipoamide Succinyltransferase in I4 Space Group
  31. 6pd8 (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 39
    Other atoms: F (1); Zn (1);
  32. 6pd9 (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 60
    Other atoms: F (1); Zn (1);
  33. 6pda (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 74
    Other atoms: F (1); Zn (1);
  34. 6pdb (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 80
    Other atoms: F (1); Zn (1);
  35. 6pdc (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 42
    Other atoms: F (1); Zn (1);
  36. 6pdd (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 41
    Other atoms: F (1); Zn (1);
  37. 6pde (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 40
    Other atoms: F (1); Zn (1);
  38. 6pdf (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 55
    Other atoms: F (1); Zn (1);
  39. 6pdg (Na: 1) - Crystal Structure of Myst Acetyltransferase Domain in Complex with Inhibitor 83
    Other atoms: F (1); Zn (1);
  40. 6ph5 (Na: 2) - Binary Product Complex Crystal Structure of Dna Polymerase Beta with An Extra-Helical Template Base
Page generated: Tue Dec 1 10:46:57 2020

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