Sodium in PDB 6on9: Crystal Structure of the Zig-8-Rig-5 IG1-IG1 Heterodimer, Tetragonal Form

The structure of Crystal Structure of the Zig-8-Rig-5 IG1-IG1 Heterodimer, Tetragonal Form, PDB code: 6on9 was solved by S.Cheng, J.D.Kurleto, E.Ozkan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	72.18 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	80.078, 80.078, 166.622, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 20.8

The binding sites of Sodium atom in the Crystal Structure of the Zig-8-Rig-5 IG1-IG1 Heterodimer, Tetragonal Form (pdb code 6on9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Zig-8-Rig-5 IG1-IG1 Heterodimer, Tetragonal Form, PDB code: 6on9:

Sodium binding site 1 out of 1 in the Crystal Structure of the Zig-8-Rig-5 IG1-IG1 Heterodimer, Tetragonal Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Zig-8-Rig-5 IG1-IG1 Heterodimer, Tetragonal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Na904 b:64.1 occ:1.00 O B:THR122 2.3 40.6 1.0 O B:HOH1080 2.4 57.7 1.0 O B:HOH1040 2.5 47.0 1.0 O B:HOH1082 2.5 62.3 1.0 O B:HOH1075 2.6 67.8 1.0 C B:THR122 3.5 42.4 1.0 O B:HOH1054 3.6 48.8 1.0 CA B:GLY123 4.1 38.9 1.0 O B:HOH1092 4.2 68.2 1.0 O B:MET31 4.2 43.3 1.0 N B:GLY123 4.3 45.1 1.0 OG B:SER33 4.5 38.7 1.0 CA B:THR122 4.5 38.3 1.0 O B:HOH1028 4.6 48.2 1.0 N B:THR122 4.6 39.7 1.0 O B:HOH1010 4.9 61.2 1.0 CB B:THR122 5.0 41.8 1.0

S.Cheng, Y.Park, J.D.Kurleto, M.Jeon, K.Zinn, J.W.Thornton, E.Ozkan. Family of Neural Wiring Receptors in Bilaterians Defined By Phylogenetic, Biochemical, and Structural Evidence. Proc.Natl.Acad.Sci.Usa V. 116 9837 2019.
ISSN: ESSN 1091-6490
PubMed: 31043568
DOI: 10.1073/PNAS.1818631116