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Sodium in PDB 6oog: Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG

Enzymatic activity of Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG

All present enzymatic activity of Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG, PDB code: 6oog was solved by P.Jimenez-Sandoval, L.Brieba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.04 / 2.02
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 66.370, 66.370, 155.530, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG (pdb code 6oog). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG, PDB code: 6oog:

Sodium binding site 1 out of 1 in 6oog

Go back to Sodium Binding Sites List in 6oog
Sodium binding site 1 out of 1 in the Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:46.9
occ:1.00
O A:HOH557 2.3 36.5 1.0
O A:ALA54 2.6 34.6 1.0
O A:HOH540 2.7 44.8 1.0
O A:GLN51 2.7 30.3 1.0
O A:ASP52 2.8 36.2 1.0
C A:ASP52 3.3 31.7 1.0
C A:ALA54 3.7 36.5 1.0
CA A:ASP52 3.8 30.7 1.0
C A:GLN51 3.8 30.1 1.0
N A:ALA54 3.9 34.5 1.0
CA A:ALA54 4.2 36.2 1.0
N A:LYS53 4.3 27.8 1.0
N A:ASP52 4.3 25.9 1.0
C A:LYS53 4.3 36.2 1.0
NE2 A:GLN51 4.5 24.2 1.0
O A:HOH489 4.5 42.7 1.0
CB A:ALA54 4.5 27.7 1.0
CA A:LYS53 4.7 34.0 1.0
N A:PRO55 4.9 36.7 1.0
C A:PRO55 4.9 39.9 1.0
O A:LYS53 4.9 35.0 1.0
O A:HOH555 5.0 39.7 1.0
O A:PRO55 5.0 43.3 1.0

Reference:

P.Jimenez-Sandoval, L.Brieba. Crystal Structures of Triosephosphate Isomerases From Taenia Solium and Schistosoma Mansoni Provide Insights For Rationale Vaccine and Drug Design Against Helminth Parasites To Be Published.
Page generated: Tue Oct 8 12:34:10 2024

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