Sodium in PDB 6o93: D-Alanyl Transferase Dltd From Enterococcus Faecalis

The structure of D-Alanyl Transferase Dltd From Enterococcus Faecalis, PDB code: 6o93 was solved by M.Shakhashiro, K.V.Korotkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.96 / 2.18
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.750, 102.750, 205.750, 90.00, 90.00, 120.00
R / Rfree (%)	18.3 / 21.9

The structure of D-Alanyl Transferase Dltd From Enterococcus Faecalis also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the D-Alanyl Transferase Dltd From Enterococcus Faecalis (pdb code 6o93). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the D-Alanyl Transferase Dltd From Enterococcus Faecalis, PDB code: 6o93:

Sodium binding site 1 out of 1 in the D-Alanyl Transferase Dltd From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of D-Alanyl Transferase Dltd From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na510 b:45.5 occ:1.00 HG A:SER72 2.2 24.0 1.0 OE1 A:GLU74 2.5 22.1 1.0 OG A:SER72 2.8 19.9 1.0 O4 A:PO4505 2.9 52.0 1.0 HG A:SER73 2.9 25.6 1.0 OG A:SER130 2.9 26.4 1.0 O A:HOH748 3.2 33.0 1.0 O2 A:PO4505 3.2 53.6 1.0 H A:GLU74 3.2 23.3 1.0 H A:SER73 3.4 20.7 1.0 HG A:SER130 3.4 31.7 1.0 HB3 A:GLU74 3.5 24.8 1.0 OG A:SER73 3.6 21.3 1.0 O A:HOH677 3.6 22.0 1.0 P A:PO4505 3.7 52.6 1.0 CD A:GLU74 3.7 21.2 1.0 HB3 A:SER130 3.7 29.9 1.0 HD2 A:HIS375 3.7 36.8 1.0 CB A:SER130 3.9 24.9 1.0 N A:SER73 3.9 17.2 1.0 N A:GLU74 4.0 19.4 1.0 CB A:SER72 4.0 18.0 1.0 HB2 A:SER72 4.0 21.6 1.0 HE2 A:HIS375 4.1 37.5 1.0 HE1 A:TRP133 4.1 23.4 1.0 HB2 A:SER130 4.2 29.9 1.0 CD2 A:HIS375 4.2 30.6 1.0 O A:HOH622 4.3 14.1 1.0 CB A:GLU74 4.3 20.6 1.0 HD12 A:ILE374 4.4 36.4 1.0 NE2 A:HIS375 4.4 31.2 1.0 OE2 A:GLU74 4.5 20.5 1.0 CG A:GLU74 4.5 20.8 1.0 C A:SER72 4.6 17.9 1.0 CB A:SER73 4.6 20.0 1.0 CA A:SER73 4.6 18.2 1.0 O1 A:PO4505 4.7 52.0 1.0 HB3 A:SER72 4.7 21.6 1.0 H A:SER72 4.7 20.4 1.0 O3 A:PO4505 4.7 53.2 1.0 C A:SER73 4.7 18.9 1.0 NE1 A:TRP133 4.7 19.5 1.0 CA A:GLU74 4.7 19.9 1.0 CA A:SER72 4.8 17.4 1.0 HG3 A:GLU74 4.8 25.0 1.0 HG13 A:ILE374 4.9 35.4 1.0 OE1 A:GLN132 4.9 27.1 1.0 HD11 A:ILE374 4.9 36.4 1.0 O A:HOH714 4.9 19.2 1.0 HB3 A:SER73 5.0 24.1 1.0

M.Shakhashiro, Z.A.Williamson, N.Korotkova, K.V.Korotkov. D-Alanyl Transferase Dltd From Enterococcus Faecalis To Be Published.