Sodium in PDB 6o8g: Crystal Structure of Uvrb Bound to Fully Duplex Dna

The structure of Crystal Structure of Uvrb Bound to Fully Duplex Dna, PDB code: 6o8g was solved by S.-J.Lee, R.-J.Sung, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.24 / 2.64
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	170.685, 201.181, 62.664, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 27.4

The structure of Crystal Structure of Uvrb Bound to Fully Duplex Dna also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Uvrb Bound to Fully Duplex Dna (pdb code 6o8g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Uvrb Bound to Fully Duplex Dna, PDB code: 6o8g:

Sodium binding site 1 out of 1 in the Crystal Structure of Uvrb Bound to Fully Duplex Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Uvrb Bound to Fully Duplex Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Na700 b:59.6 occ:1.00 C5' E:DG13 3.8 57.3 1.0 C3' E:DG12 3.8 59.5 1.0 O3' E:DG12 3.9 66.0 1.0 O5' E:DG12 4.4 56.0 1.0 C2' E:DG13 4.4 49.6 1.0 C3' E:DG13 4.4 52.5 1.0 C4' E:DG13 4.6 53.4 1.0 C5' E:DG12 4.7 57.6 1.0 C2' E:DG12 4.8 56.5 1.0 O5' E:DG13 4.8 64.2 1.0 C4' E:DG12 4.9 58.5 1.0 P E:DG13 5.0 67.0 1.0

S.J.Lee, R.J.Sung, G.L.Verdine. Mechanism of Dna Lesion Homing and Recognition By the Uvr Nucleotide Excision Repair System. Res V.2019 41746 2019.
ISSN: ESSN 2639-5274
PubMed: 31549070
DOI: 10.34133/2019/5641746