Sodium in PDB 6oe6: Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130)

The structure of Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130), PDB code: 6oe6 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.12 / 1.70
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	50.630, 50.630, 99.480, 90.00, 90.00, 120.00
R / Rfree (%)	17.6 / 20.8

The binding sites of Sodium atom in the Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130) (pdb code 6oe6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130), PDB code: 6oe6:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:34.3 occ:1.00 O A:HOH307 2.1 36.1 1.0 O A:SER121 2.5 24.2 1.0 C A:SER121 3.7 23.6 1.0 O A:HOH311 3.9 35.3 1.0 O1 A:FMT202 3.9 38.0 1.0 CA A:PHE122 4.2 22.5 1.0 N A:PHE122 4.4 23.5 1.0 C A:FMT202 4.4 34.0 1.0 CD1 A:PHE122 4.5 20.8 1.0 N A:GLN123 4.7 21.1 1.0 CA A:SER121 4.9 27.7 1.0 OG A:SER121 4.9 29.5 1.0 N A:SER121 4.9 28.1 1.0

Sodium binding site 2 out of 2 in the Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:47.5 occ:1.00 O B:HOH310 2.1 45.2 1.0 O A:HOH317 2.4 29.2 1.0 O A:LEU99 2.5 24.6 1.0 O B:SER121 2.5 26.4 1.0 ND2 A:ASN102 2.8 33.9 1.0 C A:LEU99 3.6 27.0 1.0 C B:SER121 3.7 28.0 1.0 O A:HOH319 3.7 34.4 1.0 CG A:ASN102 3.8 40.9 1.0 O1 B:FMT200 3.9 35.2 1.0 O B:HOH312 3.9 39.3 1.0 O A:HOH321 3.9 52.3 1.0 OD1 A:ASN102 4.0 58.1 1.0 CA B:PHE122 4.2 20.1 1.0 O A:TYR101 4.3 29.3 1.0 O A:GLY100 4.3 24.4 1.0 C B:FMT200 4.3 31.2 1.0 C A:GLY100 4.4 24.6 1.0 N B:PHE122 4.4 24.9 1.0 CB A:LEU99 4.4 26.1 1.0 CA A:GLY100 4.5 26.7 1.0 CA A:LEU99 4.5 22.8 1.0 N A:GLY100 4.5 25.5 1.0 CD1 B:PHE122 4.6 22.2 1.0 N A:LEU99 4.7 22.6 1.0 N B:GLN123 4.8 27.0 1.0 OG B:SER121 4.8 33.4 1.0 C A:TYR101 4.8 27.9 1.0 CA B:SER121 4.8 28.8 1.0 N B:SER121 4.9 28.7 1.0 N A:TYR101 5.0 24.3 1.0

J.Abendroth, S.J.Mayclin, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Structure of An Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1-130) To Be Published.