Atomistry » Sodium » PDB 6d5l-6dv4
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Sodium in PDB, part 193 (files: 7681-7720), PDB 6d5l-6dv4

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7681-7720 (PDB 6d5l-6dv4).
  1. 6d5l (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: F (1); Mg (1); Cl (2);
  2. 6d64 (Na: 1) - Crystal Structure of Human CD1B in Complex with Popc
    Other atoms: I (2); Cl (7);
  3. 6d7a (Na: 4) - Structure of T. Gondii PLP1 Beta-Rich Domain
  4. 6d7j (Na: 4) - The Crystal Structure of Parabacteroides Merdae Beta-Glucuronidase (Gus) with Glycerol in Active-Site
    Other atoms: K (4);
  5. 6d8g (Na: 2) - D341A D367A Calcium Binding Mutant of Bacteroides Uniformis Beta- Glucuronidase 2
  6. 6d8x (Na: 3) - Ppar Gamma Lbd Complexed with the Agonist GW1929
  7. 6d99 (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Galnac (Open, Oxidized)
  8. 6d9a (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Galnac (Open, Reduced)
  9. 6d9b (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized)
  10. 6d9c (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Reduced)
  11. 6d9d (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glcnac (Open, Oxidized)
  12. 6d9e (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glcnac (Open, Reduced)
  13. 6d9x (Na: 1) - Discovery of Potent 2-Aryl-6,7-Dihydro-5HPYRROLO[ 1,2-A]Imidazoles As WDR5 Win-Site Inhibitors Using Fragment-Based Methods and Structure- Based Design
  14. 6da7 (Na: 1) - Crystal Structure of the Ttnd Decarboxylase From the Tautomycetin Biosynthesis Pathway of Streptomyces Griseochromogenes with Apo Form at 1.83 A Resolution (I222)
  15. 6dam (Na: 1) - Crystal Structure of Lanthanide-Dependent Methanol Dehydrogenase Xoxf From Methylomicrobium Buryatense 5G
    Other atoms: La (1);
  16. 6dbd (Na: 1) - Crystal Structure of Vhh R326
  17. 6dds (Na: 1) - Mycobacterium Tuberculosis Dihydrofolate Reductase Complexed with Beta-Nadph and 4-[3-[3-[2,4-Bis(Azanyl)-6-Ethyl-Pyrimidin-5-Yl]Prop- 2-Ynyl]-5-Methoxy-Phenyl]Benzoic Acid
  18. 6dft (Na: 1) - Trypanosoma Brucei Deoxyhypusine Synthase
  19. 6dia (Na: 2) - Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
    Other atoms: Ca (3);
  20. 6dic (Na: 4) - D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
    Other atoms: Ca (3); Cl (3);
  21. 6dif (Na: 1) - Wild-Type Hiv-1 Protease in Complex with Tipranavir
    Other atoms: F (6); Cl (3);
  22. 6dil (Na: 1) - Hiv-1 Protease with Single Mutation L76V in Complex with Tipranavir
    Other atoms: F (6); Cl (2);
  23. 6dj1 (Na: 1) - Wild-Type Hiv-1 Protease in Complex with Lopinavir
    Other atoms: Cl (3);
  24. 6dj2 (Na: 1) - Hiv-1 Protease with Single Mutation L76V in Complex with Lopinavir
    Other atoms: Cl (3);
  25. 6dj5 (Na: 2) - Hiv-1 Protease with Mutation L76V in Complex with Grl-0519 (Tris- Tetrahydrofuran As P2 Ligand)
    Other atoms: Cl (5);
  26. 6dj6 (Na: 1) - The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B2 Protein Loaded with Cis-Oleic Acid to 1.9 Angstrom Resolution
  27. 6dj7 (Na: 1) - Hiv-1 Protease with Mutation L76V in Complex with Grl-5010 (Gem- Difluoro-Bis-Tetrahydrofuran As P2 Ligand)
    Other atoms: F (4); Cl (3);
  28. 6djq (Na: 4) - VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-
    Other atoms: F (16); Mg (4); Al (4);
  29. 6dlh (Na: 1) - Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107
    Other atoms: Ca (5);
  30. 6dlq (Na: 4) - Prpp Riboswitch Bound to Prpp, Manganese Chloride Soaked Structure
    Other atoms: K (1); Mn (12);
  31. 6dlt (Na: 3) - Prpp Riboswitch Bound to Prpp, Native Structure
    Other atoms: Mg (3);
  32. 6dmc (Na: 10) - Ppgpp Riboswitch Bound to Ppgpp, Native Structure
    Other atoms: Mg (21); K (1);
  33. 6dmd (Na: 8) - Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
    Other atoms: Mg (8); K (1); Mn (10);
  34. 6dmi (Na: 2) - A Multiconformer Ligand Model of 5T5 Bound to Bace-1
    Other atoms: F (6); Cl (3);
  35. 6dq0 (Na: 1) - Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine
  36. 6dq1 (Na: 1) - Sfgfp N149 Mutated to 4-Nitro-L-Phenylalanine
  37. 6ds2 (Na: 10) - Crystal Structure of Ni(II)-Bound Human Calprotectin
    Other atoms: Ni (6);
  38. 6dtd (Na: 2) - High-Resolution Crystal Structure of CAS13B From Prevotella Buccae
    Other atoms: Cl (2);
  39. 6dv0 (Na: 1) - Hiv-1 Wild Type Protease with Grl-02815A, A Thiochroman Heterocycle with (S)-Boc-Amine Functionality As the P2 Ligand
    Other atoms: Cl (2);
  40. 6dv4 (Na: 1) - Hiv-1 Wild Type Protease with Grl-04315A, A Tetrahydronaphthalene Carboxamide with (R)-Boc-Amine and (S)-Hydroxyl Functionalities As the P2 Ligand
    Other atoms: Cl (2);
Page generated: Wed Nov 4 05:36:52 2020

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