Atomistry » Sodium » PDB 6d4o-6dmd
Atomistry »
  Sodium »
    PDB 6d4o-6dmd »
      6d4o »
      6d50 »
      6d55 »
      6d56 »
      6d59 »
      6d5e »
      6d5j »
      6d64 »
      6d5l »
      6d7a »
      6d7j »
      6d8g »
      6d8x »
      6d9a »
      6d9b »
      6d9c »
      6d9e »
      6da7 »
      6dam »
      6dbd »
      6dds »
      6dft »
      6dia »
      6dic »
      6dif »
      6dil »
      6dj1 »
      6dj2 »
      6dj5 »
      6dj6 »
      6dj7 »
      6djq »
      6dlh »
      6dlq »
      6dlt »
      6dmc »
      6dmd »
      6d9x »
      6d9d »
      6d99 »

Sodium in PDB, part 193 (files: 7681-7720), PDB 6d4o-6dmd

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7681-7720 (PDB 6d4o-6dmd).
  1. 6d4o (Na: 1) - Eubacterium Eligens Beta-Glucuronidase Bound to An Amoxapine- Glucuronide Conjugate
    Other atoms: Cl (2);
  2. 6d50 (Na: 2) - Bacteroides Uniforms Beta-Glucuronidase 2 Bound to D-Glucaro-1,5- Lactone
    Other atoms: Ca (2);
  3. 6d55 (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: F (1); Mg (1); Cl (1);
  4. 6d56 (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: F (1); Mg (1); Cl (1);
  5. 6d59 (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: F (1); Mg (1); Cl (1);
  6. 6d5e (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: F (1); Mg (1); Cl (5);
  7. 6d5j (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: F (1); Mg (1); Cl (1);
  8. 6d5l (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: F (1); Mg (1); Cl (2);
  9. 6d64 (Na: 1) - Crystal Structure of Human CD1B in Complex with Popc
    Other atoms: I (2); Cl (7);
  10. 6d7a (Na: 4) - Structure of T. Gondii PLP1 Beta-Rich Domain
  11. 6d7j (Na: 4) - The Crystal Structure of Parabacteroides Merdae Beta-Glucuronidase (Gus) with Glycerol in Active-Site
    Other atoms: K (4);
  12. 6d8g (Na: 2) - D341A D367A Calcium Binding Mutant of Bacteroides Uniformis Beta- Glucuronidase 2
  13. 6d8x (Na: 3) - Ppar Gamma Lbd Complexed with the Agonist GW1929
  14. 6d99 (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Galnac (Open, Oxidized)
  15. 6d9a (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Galnac (Open, Reduced)
  16. 6d9b (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized)
  17. 6d9c (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Reduced)
  18. 6d9d (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glcnac (Open, Oxidized)
  19. 6d9e (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glcnac (Open, Reduced)
  20. 6d9x (Na: 1) - Discovery of Potent 2-Aryl-6,7-Dihydro-5HPYRROLO[ 1,2-A]Imidazoles As WDR5 Win-Site Inhibitors Using Fragment-Based Methods and Structure- Based Design
  21. 6da7 (Na: 1) - Crystal Structure of the Ttnd Decarboxylase From the Tautomycetin Biosynthesis Pathway of Streptomyces Griseochromogenes with Apo Form at 1.83 A Resolution (I222)
  22. 6dam (Na: 1) - Crystal Structure of Lanthanide-Dependent Methanol Dehydrogenase Xoxf From Methylomicrobium Buryatense 5G
    Other atoms: La (1);
  23. 6dbd (Na: 1) - Crystal Structure of Vhh R326
  24. 6dds (Na: 1) - Mycobacterium Tuberculosis Dihydrofolate Reductase Complexed with Beta-Nadph and 4-[3-[3-[2,4-Bis(Azanyl)-6-Ethyl-Pyrimidin-5-Yl]Prop- 2-Ynyl]-5-Methoxy-Phenyl]Benzoic Acid
  25. 6dft (Na: 1) - Trypanosoma Brucei Deoxyhypusine Synthase
  26. 6dia (Na: 2) - Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
    Other atoms: Ca (3);
  27. 6dic (Na: 4) - D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
    Other atoms: Ca (3); Cl (3);
  28. 6dif (Na: 1) - Wild-Type Hiv-1 Protease in Complex with Tipranavir
    Other atoms: F (6); Cl (3);
  29. 6dil (Na: 1) - Hiv-1 Protease with Single Mutation L76V in Complex with Tipranavir
    Other atoms: F (6); Cl (2);
  30. 6dj1 (Na: 1) - Wild-Type Hiv-1 Protease in Complex with Lopinavir
    Other atoms: Cl (3);
  31. 6dj2 (Na: 1) - Hiv-1 Protease with Single Mutation L76V in Complex with Lopinavir
    Other atoms: Cl (3);
  32. 6dj5 (Na: 2) - Hiv-1 Protease with Mutation L76V in Complex with Grl-0519 (Tris- Tetrahydrofuran As P2 Ligand)
    Other atoms: Cl (5);
  33. 6dj6 (Na: 1) - The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B2 Protein Loaded with Cis-Oleic Acid to 1.9 Angstrom Resolution
  34. 6dj7 (Na: 1) - Hiv-1 Protease with Mutation L76V in Complex with Grl-5010 (Gem- Difluoro-Bis-Tetrahydrofuran As P2 Ligand)
    Other atoms: F (4); Cl (3);
  35. 6djq (Na: 4) - VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-
    Other atoms: F (16); Mg (4); Al (4);
  36. 6dlh (Na: 1) - Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107
    Other atoms: Ca (5);
  37. 6dlq (Na: 4) - Prpp Riboswitch Bound to Prpp, Manganese Chloride Soaked Structure
    Other atoms: K (1); Mn (12);
  38. 6dlt (Na: 3) - Prpp Riboswitch Bound to Prpp, Native Structure
    Other atoms: Mg (3);
  39. 6dmc (Na: 10) - Ppgpp Riboswitch Bound to Ppgpp, Native Structure
    Other atoms: Mg (21); K (1);
  40. 6dmd (Na: 8) - Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
    Other atoms: Mg (8); K (1); Mn (10);
Page generated: Sun Aug 22 09:10:38 2021

Last articles

Zn in 7RRP
Zn in 7OKY
Zn in 7OL0
Zn in 7OKX
Zn in 7ONB
Zn in 7RSF
Zn in 7OUF
Zn in 7OUG
Zn in 7OUH
Zn in 7RGN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy