Sodium in PDB, part 193 (files: 7681-7720),
PDB 6d4o-6dmd
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7681-7720 (PDB 6d4o-6dmd).
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6d4o (Na: 1) - Eubacterium Eligens Beta-Glucuronidase Bound to An Amoxapine- Glucuronide Conjugate
Other atoms:
Cl (2);
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6d50 (Na: 2) - Bacteroides Uniforms Beta-Glucuronidase 2 Bound to D-Glucaro-1,5- Lactone
Other atoms:
Ca (2);
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6d55 (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
Other atoms:
F (1);
Mg (1);
Cl (1);
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6d56 (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
Other atoms:
F (1);
Mg (1);
Cl (1);
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6d59 (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
Other atoms:
F (1);
Mg (1);
Cl (1);
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6d5e (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
Other atoms:
F (1);
Mg (1);
Cl (5);
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6d5j (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
Other atoms:
F (1);
Mg (1);
Cl (1);
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6d5l (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
Other atoms:
F (1);
Mg (1);
Cl (2);
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6d64 (Na: 1) - Crystal Structure of Human CD1B in Complex with Popc
Other atoms:
I (2);
Cl (7);
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6d7a (Na: 4) - Structure of T. Gondii PLP1 Beta-Rich Domain
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6d7j (Na: 4) - The Crystal Structure of Parabacteroides Merdae Beta-Glucuronidase (Gus) with Glycerol in Active-Site
Other atoms:
K (4);
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6d8g (Na: 2) - D341A D367A Calcium Binding Mutant of Bacteroides Uniformis Beta- Glucuronidase 2
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6d8x (Na: 3) - Ppar Gamma Lbd Complexed with the Agonist GW1929
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6d99 (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Galnac (Open, Oxidized)
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6d9a (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Galnac (Open, Reduced)
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6d9b (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized)
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6d9c (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Reduced)
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6d9d (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glcnac (Open, Oxidized)
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6d9e (Na: 1) - Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glcnac (Open, Reduced)
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6d9x (Na: 1) - Discovery of Potent 2-Aryl-6,7-Dihydro-5HPYRROLO[ 1,2-A]Imidazoles As WDR5 Win-Site Inhibitors Using Fragment-Based Methods and Structure- Based Design
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6da7 (Na: 1) - Crystal Structure of the Ttnd Decarboxylase From the Tautomycetin Biosynthesis Pathway of Streptomyces Griseochromogenes with Apo Form at 1.83 A Resolution (I222)
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6dam (Na: 1) - Crystal Structure of Lanthanide-Dependent Methanol Dehydrogenase Xoxf From Methylomicrobium Buryatense 5G
Other atoms:
La (1);
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6dbd (Na: 1) - Crystal Structure of Vhh R326
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6dds (Na: 1) - Mycobacterium Tuberculosis Dihydrofolate Reductase Complexed with Beta-Nadph and 4-[3-[3-[2,4-Bis(Azanyl)-6-Ethyl-Pyrimidin-5-Yl]Prop- 2-Ynyl]-5-Methoxy-Phenyl]Benzoic Acid
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6dft (Na: 1) - Trypanosoma Brucei Deoxyhypusine Synthase
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6dia (Na: 2) - Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
Other atoms:
Ca (3);
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6dic (Na: 4) - D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
Other atoms:
Ca (3);
Cl (3);
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6dif (Na: 1) - Wild-Type Hiv-1 Protease in Complex with Tipranavir
Other atoms:
F (6);
Cl (3);
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6dil (Na: 1) - Hiv-1 Protease with Single Mutation L76V in Complex with Tipranavir
Other atoms:
F (6);
Cl (2);
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6dj1 (Na: 1) - Wild-Type Hiv-1 Protease in Complex with Lopinavir
Other atoms:
Cl (3);
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6dj2 (Na: 1) - Hiv-1 Protease with Single Mutation L76V in Complex with Lopinavir
Other atoms:
Cl (3);
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6dj5 (Na: 2) - Hiv-1 Protease with Mutation L76V in Complex with Grl-0519 (Tris- Tetrahydrofuran As P2 Ligand)
Other atoms:
Cl (5);
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6dj6 (Na: 1) - The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B2 Protein Loaded with Cis-Oleic Acid to 1.9 Angstrom Resolution
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6dj7 (Na: 1) - Hiv-1 Protease with Mutation L76V in Complex with Grl-5010 (Gem- Difluoro-Bis-Tetrahydrofuran As P2 Ligand)
Other atoms:
F (4);
Cl (3);
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6djq (Na: 4) - VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-
Other atoms:
F (16);
Mg (4);
Al (4);
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6dlh (Na: 1) - Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107
Other atoms:
Ca (5);
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6dlq (Na: 4) - Prpp Riboswitch Bound to Prpp, Manganese Chloride Soaked Structure
Other atoms:
K (1);
Mn (12);
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6dlt (Na: 3) - Prpp Riboswitch Bound to Prpp, Native Structure
Other atoms:
Mg (3);
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6dmc (Na: 10) - Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Other atoms:
Mg (21);
K (1);
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6dmd (Na: 8) - Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Other atoms:
Mg (8);
K (1);
Mn (10);
Page generated: Thu Dec 28 11:26:00 2023
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