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Atomistry » Sodium » PDB 6d4o-6dmd » 6dmc | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Atomistry » Sodium » PDB 6d4o-6dmd » 6dmc » |
Sodium in PDB 6dmc: Ppgpp Riboswitch Bound to Ppgpp, Native StructureProtein crystallography data
The structure of Ppgpp Riboswitch Bound to Ppgpp, Native Structure, PDB code: 6dmc
was solved by
A.Peselis,
A.Serganov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Other elements in 6dmc:
The structure of Ppgpp Riboswitch Bound to Ppgpp, Native Structure also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
(pdb code 6dmc). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 10 binding sites of Sodium where determined in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure, PDB code: 6dmc: Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; Sodium binding site 1 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 1 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 2 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 2 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 3 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 3 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 4 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 4 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 5 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 5 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 6 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 6 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 7 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 7 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 8 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 8 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 9 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 9 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Sodium binding site 10 out of 10 in 6dmcGo back to Sodium Binding Sites List in 6dmc
Sodium binding site 10 out
of 10 in the Ppgpp Riboswitch Bound to Ppgpp, Native Structure
Mono view Stereo pair view
Reference:
A.Peselis,
A.Serganov.
Ykkc Riboswitches Employ An Add-on Helix to Adjust Specificity For Polyanionic Ligands. Nat. Chem. Biol. V. 14 887 2018.
Page generated: Tue Dec 15 12:08:28 2020
ISSN: ESSN 1552-4469 PubMed: 30120360 DOI: 10.1038/S41589-018-0114-4 |
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