Sodium in PDB 6dlh: Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107

The structure of Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107, PDB code: 6dlh was solved by C.Vickers, K.Abe, O.Salama-Alber, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.23 / 2.20
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	156.600, 156.600, 84.571, 90.00, 90.00, 120.00
R / Rfree (%)	21.7 / 25.3

The structure of Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107 also contains other interesting chemical elements:

Calcium

(Ca)

5 atoms

The binding sites of Sodium atom in the Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107 (pdb code 6dlh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107, PDB code: 6dlh:

Sodium binding site 1 out of 1 in the Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Endo-Fucoidan Hydrolase MFFCNA4 From Glycoside Hydrolase Family 107 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na809 b:57.2 occ:1.00 NZ A:LYS553 3.2 49.1 1.0 O A:HOH1181 3.4 60.5 1.0 CE A:LYS553 3.8 44.5 1.0 O A:VAL126 4.0 52.2 1.0 C A:VAL126 4.4 50.7 1.0 O A:SER125 4.5 51.4 1.0 O A:GLU124 4.6 60.5 1.0 CG2 A:VAL556 4.7 38.0 1.0 N A:ASP127 4.7 48.5 1.0 CA A:ASP127 4.8 45.0 1.0 C A:SER125 4.8 55.1 1.0

C.Vickers, F.Liu, K.Abe, O.Salama-Alber, M.Jenkins, C.M.K.Springate, J.E.Burke, S.G.Withers, A.B.Boraston. Endo-Fucoidan Hydrolases From Glycoside Hydrolase Family 107 (GH107) Display Structural and Mechanistic Similarities to Alpha-L-Fucosidases From GH29. J. Biol. Chem. V. 293 18296 2018.
ISSN: ESSN 1083-351X
PubMed: 30282808
DOI: 10.1074/JBC.RA118.005134