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Atomistry » Sodium » PDB 6d4o-6dmd » 6dmd | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Atomistry » Sodium » PDB 6d4o-6dmd » 6dmd » |
Sodium in PDB 6dmd: Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride StructureProtein crystallography data
The structure of Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure, PDB code: 6dmd
was solved by
A.Peselis,
A.Serganov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Other elements in 6dmd:
The structure of Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
(pdb code 6dmd). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 8 binding sites of Sodium where determined in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure, PDB code: 6dmd: Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; Sodium binding site 1 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 1 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Sodium binding site 2 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 2 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Sodium binding site 3 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 3 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Sodium binding site 4 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 4 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Sodium binding site 5 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 5 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Sodium binding site 6 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 6 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Sodium binding site 7 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 7 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Sodium binding site 8 out of 8 in 6dmdGo back to Sodium Binding Sites List in 6dmd
Sodium binding site 8 out
of 8 in the Ppgpp Riboswitch Bound to Ppgpp, Manganese Chloride Structure
Mono view Stereo pair view
Reference:
A.Peselis,
A.Serganov.
Ykkc Riboswitches Employ An Add-on Helix to Adjust Specificity For Polyanionic Ligands. Nat. Chem. Biol. V. 14 887 2018.
Page generated: Tue Dec 15 12:08:28 2020
ISSN: ESSN 1552-4469 PubMed: 30120360 DOI: 10.1038/S41589-018-0114-4 |
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