Sodium in PDB 6d8x: Ppar Gamma Lbd Complexed with the Agonist GW1929

The structure of Ppar Gamma Lbd Complexed with the Agonist GW1929, PDB code: 6d8x was solved by T.C.Mou, I.M.Chrisman, T.S.Hughes, S.R.Sprang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.31 / 1.90
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	61.934, 61.934, 167.920, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 24.5

The binding sites of Sodium atom in the Ppar Gamma Lbd Complexed with the Agonist GW1929 (pdb code 6d8x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Ppar Gamma Lbd Complexed with the Agonist GW1929, PDB code: 6d8x:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Ppar Gamma Lbd Complexed with the Agonist GW1929


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ppar Gamma Lbd Complexed with the Agonist GW1929 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:45.3 occ:1.00 OE1 A:GLN444 2.5 53.0 1.0 NA A:NA504 3.0 45.6 1.0 O A:HOH655 3.1 43.7 1.0 CB A:GLN444 3.7 24.8 1.0 CD A:GLN444 3.7 62.3 1.0 CG2 A:THR440 4.1 38.8 1.0 CG A:GLN444 4.3 50.6 1.0 O A:THR440 4.5 26.1 1.0 NE2 A:GLN444 4.8 68.7 1.0 CA A:GLN444 4.8 27.5 1.0

Sodium binding site 2 out of 3 in the Ppar Gamma Lbd Complexed with the Agonist GW1929


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Ppar Gamma Lbd Complexed with the Agonist GW1929 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:45.6 occ:1.00 NA A:NA503 3.0 45.3 1.0 O A:THR440 3.1 26.1 1.0 CG2 A:THR440 3.6 38.8 1.0 N A:GLN444 3.7 18.7 1.0 CB A:GLN444 3.8 24.8 1.0 C A:THR440 4.1 23.6 1.0 CA A:GLN444 4.1 27.5 1.0 CB A:ARG443 4.2 22.1 1.0 C A:ARG443 4.4 23.5 1.0 CA A:THR440 4.5 24.5 1.0 CB A:THR440 4.7 33.1 1.0 OE1 A:GLN444 4.8 53.0 1.0 CA A:ARG443 4.8 22.6 1.0

Sodium binding site 3 out of 3 in the Ppar Gamma Lbd Complexed with the Agonist GW1929


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Ppar Gamma Lbd Complexed with the Agonist GW1929 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na505 b:62.6 occ:1.00 NZ A:LYS457 2.4 70.2 1.0 O A:HOH618 3.2 57.2 1.0 CB A:TYR473 3.5 49.2 1.0 CE A:LYS457 3.8 75.8 1.0 CG A:TYR473 4.0 42.2 1.0 CD2 A:TYR473 4.4 37.9 1.0 O A:TYR473 4.7 38.0 1.0 CD A:LYS457 4.7 76.5 1.0 CD1 A:LEU465 4.7 73.0 1.0 CA A:TYR473 4.8 50.4 1.0 CD1 A:TYR473 4.8 38.1 1.0 C A:TYR473 4.8 53.7 1.0 CG1 A:VAL450 4.9 44.2 1.0

I.M.Chrisman, T.C.Mou, S.R.Sprang, T.S.Hughes. Ppar Gamma Lbd Complexed with the Agonist GW1929 To Be Published.