Sodium in PDB, part 190 (files: 7561-7600),
PDB 6c0l-6cgf
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7561-7600 (PDB 6c0l-6cgf).
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6c0l (Na: 1) - Crystal Structure of Hiv-1 E138K Mutant Reverse Transcriptase in Complex with Non-Nucleoside Inhibitor K-5A2
Other atoms:
Mg (1);
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6c12 (Na: 2) - Sdha-Sdhe Complex
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6c15 (Na: 1) - CD1C in Complex with Phosphatidylcholine
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6c1k (Na: 4) - Hypopp Mutant with LIGAND1
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6c1m (Na: 4) - Navab Normopp Mutant
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6c1r (Na: 1) - Crystal Structure of Human C5A Receptor in Complex with An Orthosteric Antagonist PMX53 and An Allosteric Antagonist Avacopan
Other atoms:
F (4);
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6c2h (Na: 1) - Crystal Structures of Cystathionine Beta-Synthase From Saccharomyces Cerevisiae: the Structure of the Catalytic Core
Other atoms:
Ca (1);
Cl (1);
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6c2q (Na: 1) - Crystal Structures of Cystathionine Beta-Synthase From Saccharomyces Cerevisiae: the Structure of the Plp-L-Serine Intermediate
Other atoms:
Ca (1);
Cl (1);
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6c2z (Na: 1) - Crystal Structures of Cystathionine Beta-Synthase From Saccharomyces Cerevisiae: the Structure of the Plp-Aminoacrylate Intermediate
Other atoms:
Ca (1);
Cl (1);
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6c39 (Na: 2) - Apo Crystal Structure of Wild-Type S. Aureus Penicillin Binding Protein 4 (PBP4)
Other atoms:
Zn (5);
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6c3k (Na: 2) - Apo Crystal Structure of S. Aureus Penicillin Binding Protein 4 (PBP4) Mutant (E183A, F241R)
Other atoms:
Zn (5);
Cl (2);
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6c4k (Na: 1) - Full Length Hugdh with A104L Substitution in the Absence of Ligand
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6c4p (Na: 1) - Crystal Structures of Cystathionine Beta-Synthase From Saccharomyces Cerevisiae: the Structure of the Pmp Complex
Other atoms:
Ca (1);
Cl (1);
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6c5b (Na: 3) - Crystal Structure Analysis of Laphzm
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6c67 (Na: 2) - Mycobacterium Tuberculosis Adenosine Kinase Bound to Iodotubercidin
Other atoms:
I (4);
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6c6c (Na: 2) - Structure of Glycolipid Agsa[20,6P] in Complex with Mouse CD1D
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6c6e (Na: 2) - Structure of Glycolipid Agsa[26,6P] in Complex with Mouse CD1D
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6c6f (Na: 2) - Structure of Glycolipid Agsa[26,P5P] in Complex with Mouse CD1D
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6c7w (Na: 1) - Carbonic Anhydrase 2 in Complex with [(2R,3S,4R,5R)-5-(6-Amino-9H- Purin-9-Yl)-3,4-Dihydroxytetrahydro-2-Furanyl]Methyl Sulfamate Inhibitor
Other atoms:
Zn (1);
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6c7x (Na: 1) - Carbonic Anhydrase 2 in Complex with 2-Chloro-5'-O-Sulfamoyladenosine
Other atoms:
Cl (1);
Zn (1);
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6c86 (Na: 1) - Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine
Other atoms:
Cl (1);
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6c89 (Na: 2) - Ndm-1 Beta-Lactamase Exhibits Differential Active Site Sequence Requirements For the Hydrolysis of Penicillin Versus Carbapenem Antibiotics
Other atoms:
Zn (8);
Cl (2);
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6c96 (Na: 2) - Cryo-Em Structure of Mouse TPC1 Channel in the Apo State
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6c9n (Na: 2) - Mycobacterium Tuberculosis Adenosine Kinase Bound to Sangivamycin
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6c9p (Na: 2) - Mycobacterium Tuberculosis Adenosine Kinase Bound to 6- Methylmercaptopurine Riboside
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6c9r (Na: 2) - Mycobacterium Tuberculosis Adenosine Kinase Bound to (2R,3S,4R,5R)-2- (Hydroxymethyl)-5-(6-(Thiophen-3-Yl)-9H-Purin-9-Yl)Tetrahydrofuran-3, 4-Diol
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6c9s (Na: 2) - Mycobacterium Tuberculosis Adenosine Kinase Bound to (2R,3R,4S,5R)-2- (6-([1,1'-Biphenyl]-4-Ylethynyl)-9H-Purin-9-Yl)-5-(Hydroxymethyl) Tetrahydrofuran-3,4-Diol
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6c9u (Na: 2) - Crystal Structure of [KS3][AT3] Didomain From Module 3 of 6- Deoxyerthronolide B Synthase in Complex with Antibody Fragment (Fab)
Other atoms:
K (1);
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6c9v (Na: 2) - Mycobacterium Tuberculosis Adenosine Kinase Bound to (2R,3S,4R,5R)-2- (Hydroxymethyl)-5-(6-(4-Phenylpiperazin-1-Yl)-9H-Purin-9-Yl) Tetrahydrofuran-3,4-Diol
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6caw (Na: 2) - Crystal Structure of the W95F Variant of Catalase-Peroxidase From B. Pseudomallei
Other atoms:
Fe (2);
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6cbk (Na: 1) - X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Pmp
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6cbv (Na: 1) - Crystal Structure of Bril Bound to An Affinity Matured Synthetic Antibody.
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6cc6 (Na: 2) - Crystal Structure of the W202F Variant of Catalase-Peroxidase From B. Pseudomallei
Other atoms:
Fe (2);
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6cdb (Na: 1) - Crystal Structure of V66L Czra in the Zn(II)Bound State
Other atoms:
Cl (4);
Zn (2);
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6cdj (Na: 1) - Hiv-1 Wild Type Protease with Grl-03314A, 6-5-5-Ring Fused Umbrella- Like Tetrahydropyranofuran As the P2-Ligand, A Cyclopropylaminobenzothiazole As the P2'-Ligand and 3,5- Difluorophenylmethyl As the P1-Ligand
Other atoms:
F (4);
Cl (3);
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6cdl (Na: 1) - Hiv-1 Wild Type Protease with Grl-03214A, 6-5-5-Ring Fused Umbrella- Like Tetrahydropyranofuran As the P2-Ligand, A Cyclopropylaminobenzothiazole As the P2'-Ligand and 3,5- Difluorophenylmethyl As the P1-Ligand
Other atoms:
F (4);
Cl (2);
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6cdq (Na: 2) - Crystal Structure of the W202F Variant of Catalase-Peroxidase From B. Pseudomallei with Inh Bound.
Other atoms:
Fe (2);
Cl (2);
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6cek (Na: 2) - Crystal Structure of the D141N Variant of Catalase-Peroxidase From B. Pseudomallei
Other atoms:
Fe (2);
Cl (2);
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6cfq (Na: 2) - Crystal Structure of the D141N Variant of Catalase-Peroxidase From B. Pseudomallei with Inh Bound
Other atoms:
Fe (2);
Cl (2);
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6cgf (Na: 1) - Crystal Structure of Hiv-1 Y188L Mutant Reverse Transcriptase in Complex with Non-Nucleoside Inhibitor K-5A2
Other atoms:
Mg (1);
Page generated: Thu Dec 28 11:25:46 2023
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