Sodium in PDB, part 152 (files: 6041-6080),
PDB 5jiq-5kc1
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 6041-6080 (PDB 5jiq-5kc1).
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5jiq (Na: 1) - Crystal Structure of Human Transthyretin in Complex with 2,2',4,4'- Tetrahydroxybenzophenone (BP2)
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5jix (Na: 1) - Pkg II'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with 8-Br-Cgmp
Other atoms:
Br (1);
Ca (4);
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5jmo (Na: 2) - X-Ray Structure of Furin in Complex with the Inhibitory Antibody NB14
Other atoms:
Ca (6);
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5jos (Na: 1) - Crystal Structure of An Ancestral Cyclohexadienyl Dehydratase, Anccdt- 3(P188L).
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5jpg (Na: 1) - Rat Galectin 5 with Lactose
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5jrp (Na: 1) - Crystal Structure of Monoclonal Antibody MR78 Fab
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5jsf (Na: 1) - Crystal Structure of 17BETA-Hydroxysteroid Dehydrogenase 14 S205 Variant in Complex with Nad.
Other atoms:
Cl (1);
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5jui (Na: 1) - Domain-Swapped Dimer of the the KRT10-Binding Region (Br) of Psrp
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5jv4 (Na: 1) - Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound
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5jvw (Na: 7) - Crystal Structure of Mithramycin Analogue Mtm Sa-Trp in Complex with A 10-Mer Dna Agaggcctct.
Other atoms:
Zn (13);
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5jwg (Na: 1) - Crystal Structure of Porphyromonas Endodontalis DPP11 in Complex with Dipeptide Arg-Asp
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5jxf (Na: 1) - Crystal Structure of Flavobacterium Psychrophilum DPP11 in Complex with Dipeptide Arg-Asp
Other atoms:
Cl (3);
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5jxg (Na: 8) - Structure of the Unliganded Form of the Proprotein Convertase Furin.
Other atoms:
Cl (1);
Ca (3);
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5jxh (Na: 4) - Structure the Proprotein Convertase Furin in Complex with Meta- Guanidinomethyl-Phac-Rvr-Amba at 2.0 Angstrom Resolution.
Other atoms:
Cl (1);
Ca (3);
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5jxi (Na: 7) - Structure of the Unliganded Form of the Proprotein Convertase Furin in Presence of Edta.
Other atoms:
Cl (1);
Ca (1);
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5jxj (Na: 6) - Structure of the Proprotein Convertase Furin Complexed to Meta- Guanidinomethyl-Phac-Rvr-Amba in Presence of Edta
Other atoms:
Cl (1);
Ca (1);
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5jyd (Na: 4) - Crystal Structure of A Putative Short Chain Dehydrogenase From Burkholderia Cenocepacia
Other atoms:
Mg (8);
I (54);
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5jyi (Na: 1) - Trypsin Bound with Succinic Acid at 1.9A
Other atoms:
Ca (1);
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5jyx (Na: 3) - Crystal Structure of the Covalent Thioimide Intermediate of the Archaeosine Synthase Quef-Like
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5jzl (Na: 2) - The Structure of Monomeric Ultra Stable Green Fluorescent Protein
Other atoms:
Cl (2);
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5jzy (Na: 2) - Thrombin in Complex with (S)-1-((R)-2-Amino-3-Cyclohexylpropanoyl)-N- (4-Carbamimidoylbenzyl)Pyrrolidine-2-Carboxamide
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5k0c (Na: 4) - Crystal Structure of Comt in Complex with 2,4-Dimethyl-5-[3-(2- Phenylpropan-2-Yl)-1H-Pyrazol-5-Yl]-1,3-Thiazole
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5k0e (Na: 1) - Crystal Structure of Comt in Complex with 2,4-Dimethyl-5-[3-(2- Phenylpropan-2-Yl)-1H-Pyrazol-5-Yl]-1,3-Thiazole
Other atoms:
Cl (1);
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5k0f (Na: 4) - Crystal Structure of Comt in Complex with 5-[5-[1-(4-Methoxyphenyl) Ethyl]-1H-Pyrazol-3-Yl]-2,4-Dimethyl-1,3-Thiazole
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5k0g (Na: 4) - Crystal Structure of Comt in Complex with 4-[5-[1-(4-Methoxyphenyl) Ethyl]-1H-Pyrazol-3-Yl]-1,3-Dimethylpyrazole
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5k0j (Na: 4) - Crystal Structure of Comt in Complex with 5-[5-[1-(4-Methoxyphenyl) Cyclopropyl]-1H-Pyrazol-3-Yl]-2,4-Dimethyl-1,3-Thiazole
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5k2a (Na: 1) - 2.5 Angstrom A2A Adenosine Receptor Structure with Sulfur Sad Phasing Using Xfel Data
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5k2b (Na: 1) - 2.5 Angstrom A2A Adenosine Receptor Structure with Mr Phasing Using Xfel Data
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5k2c (Na: 1) - 1.9 Angstrom A2A Adenosine Receptor Structure with Sulfur Sad Phasing and Phase Extension Using Xfel Data
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5k2d (Na: 1) - 1.9A Angstrom A2A Adenosine Receptor Structure with Mr Phasing Using Xfel Data
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5k4v (Na: 2) - Three-Dimensional Structure of L-Threonine 3-Dehydrogenase From Trypanosoma Brucei Bound to Nad+ Refined to 2.2 Angstroms
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5k4w (Na: 2) - Three-Dimensional Structure of L-Threonine 3-Dehydrogenase From Trypanosoma Brucei Bound to Nadh and L-Threonine Refined to 1.72 Angstroms
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5k4y (Na: 7) - Three-Dimensional Structure of L-Threonine 3-Dehydrogenase From Trypanosoma Brucei Refined to 1.77 Angstroms
Other atoms:
Cl (7);
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5k7o (Na: 1) - Microed Structure of Lysozyme at 1.8 A Resolution
Other atoms:
Cl (2);
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5k8b (Na: 1) - X-Ray Structure of Kdna, 8-Amino-3,8-Dideoxy-Alpha-D-Manno- Octulosonate Transaminase, From Shewanella Oneidensis in the Presence of the External Aldimine with Plp and Glutamate
Other atoms:
Cl (5);
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5k8r (Na: 1) - Structure of Human Clustered Protocadherin Gamma B3 EC1-4
Other atoms:
Cl (2);
Ca (9);
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5k9h (Na: 2) - Crystal Structure of A Glycoside Hydrolase 29 Family Member From An Unknown Rumen Bacterium
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5kay (Na: 2) - Structure of Spelter Bound to ZN2+
Other atoms:
Zn (2);
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5kbn (Na: 1) - The Crystal Structure of Fluoride Channel Fluc EC2 F80I Mutant
Other atoms:
F (2);
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5kc1 (Na: 14) - Structure of the C-Terminal Dimerization Domain of ATG38
Other atoms:
I (1);
Cl (6);
Page generated: Thu Dec 28 11:22:49 2023
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