Sodium in PDB 5k7o: Microed Structure of Lysozyme at 1.8 A Resolution

All present enzymatic activity of Microed Structure of Lysozyme at 1.8 A Resolution:
3.2.1.17;

The structure of Microed Structure of Lysozyme at 1.8 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Microed Structure of Lysozyme at 1.8 A Resolution (pdb code 5k7o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Microed Structure of Lysozyme at 1.8 A Resolution, PDB code: 5k7o:

Sodium binding site 1 out of 1 in the Microed Structure of Lysozyme at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Microed Structure of Lysozyme at 1.8 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:12.2 occ:1.00 O A:CYS64 2.3 8.4 1.0 O A:SER60 2.4 15.3 1.0 O A:HOH365 2.5 13.1 1.0 O A:HOH332 2.6 11.6 1.0 CB A:SER72 2.8 17.1 1.0 C A:CYS64 3.3 9.6 1.0 OG A:SER72 3.4 21.9 1.0 C A:SER60 3.5 10.9 1.0 CA A:ASN65 3.6 8.7 1.0 N A:ASN74 3.7 17.2 1.0 N A:ASN65 3.8 10.9 1.0 N A:ARG73 3.9 18.9 1.0 CA A:SER72 4.1 19.4 1.0 CA A:ASN74 4.1 13.7 1.0 CA A:SER60 4.2 7.7 1.0 CB A:ASN74 4.2 15.2 1.0 C A:SER72 4.3 22.9 1.0 N A:CYS64 4.4 9.9 1.0 CB A:SER60 4.4 8.4 1.0 CB A:ASN65 4.4 10.7 1.0 O A:HOH376 4.4 9.1 1.0 CA A:CYS64 4.5 8.2 1.0 O A:ARG61 4.5 20.3 1.0 C A:ARG61 4.5 15.2 1.0 N A:ASP66 4.5 8.2 1.0 C A:ARG73 4.6 23.7 1.0 N A:ARG61 4.6 11.8 1.0 C A:ASN65 4.6 9.7 1.0 ND2 A:ASN65 4.7 17.0 1.0 O A:HOH337 4.8 23.5 1.0 CA A:ARG61 4.8 14.5 1.0 CA A:ARG73 4.8 21.9 1.0 N A:TRP62 4.8 13.7 1.0 OD1 A:ASP66 4.9 12.4 1.0

M.J.De La Cruz, J.Hattne, D.Shi, P.Seidler, J.Rodriguez, F.E.Reyes, M.R.Sawaya, D.Cascio, S.C.Weiss, S.K.Kim, C.S.Hinck, A.P.Hinck, G.Calero, D.Eisenberg, T.Gonen. Atomic-Resolution Structures From Fragmented Protein Crystals with the Cryoem Method Microed. Nat. Methods V. 14 399 2017.
ISSN: ESSN 1548-7105
PubMed: 28192420
DOI: 10.1038/NMETH.4178