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Sodium in PDB 5jv4: Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound

Protein crystallography data

The structure of Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound, PDB code: 5jv4 was solved by B.M.Lee, P.D.Carr, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.97 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 139.951, 84.241, 75.980, 90.00, 90.85, 90.00
R / Rfree (%) 18.9 / 23.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound (pdb code 5jv4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound, PDB code: 5jv4:

Sodium binding site 1 out of 1 in 5jv4

Go back to Sodium Binding Sites List in 5jv4
Sodium binding site 1 out of 1 in the Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na201

b:5.2
occ:1.00
NE2 A:HIS37 2.1 20.7 1.0
O A:HOH313 2.4 23.5 1.0
NE2 A:HIS40 2.5 45.9 1.0
CD2 A:HIS40 3.0 49.5 1.0
CD2 A:HIS37 3.0 19.6 1.0
CE1 A:HIS37 3.2 24.2 1.0
CE1 A:HIS40 3.8 56.4 1.0
CG A:HIS37 4.2 19.3 1.0
ND1 A:HIS37 4.2 21.4 1.0
CG A:HIS40 4.3 49.3 1.0
O A:VAL38 4.4 33.4 1.0
ND1 A:HIS40 4.7 54.4 1.0

Reference:

B.M.Lee, P.D.Carr, C.J.Jackson. Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis with F420 Bound To Be Published.
Page generated: Tue Dec 15 11:08:33 2020

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