Sodium in PDB 5jpg: Rat Galectin 5 with Lactose

The structure of Rat Galectin 5 with Lactose, PDB code: 5jpg was solved by A.Romero, F.M.Ruiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.02 / 1.90
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.024, 65.763, 112.718, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 22.8

The binding sites of Sodium atom in the Rat Galectin 5 with Lactose (pdb code 5jpg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Rat Galectin 5 with Lactose, PDB code: 5jpg:

Sodium binding site 1 out of 1 in the Rat Galectin 5 with Lactose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Rat Galectin 5 with Lactose within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:17.3 occ:1.00 O A:HOH375 2.1 17.0 1.0 OD1 A:ASP137 2.1 13.3 1.0 O A:HOH377 2.2 18.2 1.0 O A:HOH366 2.2 17.8 1.0 O A:HOH335 2.3 16.5 1.0 CG A:ASP137 3.1 9.0 1.0 OD2 A:ASP137 3.5 12.5 1.0 O A:HOH386 3.9 12.3 1.0 O A:HOH391 4.3 19.1 1.0 O A:HOH420 4.3 25.2 1.0 CB A:ASP137 4.4 8.3 1.0 O A:HOH421 4.5 32.5 1.0 O A:HOH390 4.5 28.4 1.0 O A:HOH347 4.5 24.0 1.0 CA A:ASP137 4.7 8.2 1.0 N A:ASP137 4.8 7.3 1.0 O A:HOH331 4.8 21.5 1.0 C A:GLY136 4.8 7.3 1.0

A.Romero, F.M.Ruiz. Rat Galectin 5 with Lactose To Be Published.