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Sodium in PDB, part 148 (files: 5881-5920), PDB 5hlk-5i8f

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5881-5920 (PDB 5hlk-5i8f).
  1. 5hlk (Na: 4) - Crystal Structure of the Ternary Ecorv-Dna-Lu Complex with Cleaved Dna Substrate.
    Other atoms: Lu (4);
  2. 5hll (Na: 1) - Re-Refinement of 4G4A: Room-Temperature X-Ray Diffraction Study of Cisplatin and Its Binding to HIS15 of Hewl After 14 Months Chemical Exposure in the Presence of Dmso.
    Other atoms: Pt (2); Cl (4);
  3. 5hmj (Na: 1) - Re-Refinement of 4XAN: Hen Lysozyme with Carboplatin in Sodium Bromide Solution
    Other atoms: Br (15); Pt (1);
  4. 5hn2 (Na: 1) - Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex
  5. 5hn3 (Na: 1) - Crystal Structure of Beta-Decarboxylating Dehydrogenase (TK0280) From Thermococcus Kodakarensis (Apo Form)
  6. 5hnj (Na: 2) - Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex
  7. 5hp4 (Na: 1) - Crystal Structure Bacteriohage T5 D15 Flap Endonuclease (D155K) Pseudo-Enzyme-Product Complex with Dna and Metal Ions
    Other atoms: K (1); Ca (2);
  8. 5hpr (Na: 1) - Insulin with Proline Analog Hyp at Position B28 in the T2 State
  9. 5hrt (Na: 1) - Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer
    Other atoms: K (1); Zn (2); Ca (2); Cl (1);
  10. 5hs6 (Na: 1) - Human 17BETA-Hydroxysteroid Dehydrogenase Type 14 in Complex with Estrone
  11. 5hsx (Na: 2) - Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans
  12. 5htb (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Bisubstrate Inhibitor Arc-3353
  13. 5htc (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Bisubstrate Inhibitor Arc-3372
  14. 5hut (Na: 2) - Structure of Candida Albicans Trehalose-6-Phosphate Synthase in Complex with Udp-Glucose
  15. 5hvd (Na: 3) - Full Length Open-Form Sodium Channel Navms I218C
  16. 5hvx (Na: 3) - Full Length Wild-Type Open-Form Sodium Channel Navms
  17. 5hwx (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 2.5 Mm Na+ and Zero CA2+
    Other atoms: Cl (1);
  18. 5hwy (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 10 Mm Na+ and Zero CA2+
  19. 5hxa (Na: 2) - Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans
  20. 5hxc (Na: 3) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 20 Mm Na+ and Zero CA2+
    Other atoms: Ca (2);
  21. 5hxe (Na: 4) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 100 Mm Na+ and Zero CA2+
    Other atoms: Cl (2);
  22. 5hxi (Na: 2) - 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, 5HN Bound
  23. 5hxu (Na: 2) - Structure-Function Analysis of Functionally Diverse Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes
    Other atoms: Cl (2);
  24. 5hxz (Na: 4) - Structure-Function Analysis of Functionally Diverse Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes
    Other atoms: Cl (4);
  25. 5hy1 (Na: 1) - High Resolution Structure of Barbiturase
    Other atoms: Cl (3);
  26. 5hya (Na: 3) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium EXCHANGERNCX_MJ Soaked with 150 Mm Na+ and Nominal CA2+
    Other atoms: Ca (1);
  27. 5hz7 (Na: 5) - High-Resolution Crystal Structure of the Minor Dna-Binding Pilin Comp From Neisseria Meningitidis in Fusion with Mbp
  28. 5hzr (Na: 1) - Crystal Structure of MTSNF2
  29. 5i1t (Na: 1) - 2.6 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Complex with Triacetylchitotriose
    Other atoms: Cl (1); Zn (1);
  30. 5i3j (Na: 4) - Structure-Function Studies on Role of Hydrophobic Clamping of A Basic Glutamate in Catalysis By Triosephosphate Isomerase
  31. 5i3k (Na: 3) - Structure-Function Studies on Role of Hydrophobic Clamping of A Basic Glutamate in Catalysis By Triosephosphate Isomerase
  32. 5i3l (Na: 1) - DPF3B in Complex with H3K14AC Peptide
    Other atoms: Zn (8);
  33. 5i5a (Na: 1) - Quasi Racemic Structure of Allo-ILE7-Shk and D-Shk
  34. 5i6x (Na: 1) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with Paroxetine at the Central Site
    Other atoms: F (1); Cl (1);
  35. 5i71 (Na: 2) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with S-Citalopram at the Central Site
    Other atoms: F (1);
  36. 5i73 (Na: 2) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with S-Citalopram at the Central and Allosteric Sites
    Other atoms: F (2);
  37. 5i75 (Na: 1) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with S-Citalopram at the Central Site and Br-Citalopram at the Allosteric Site
    Other atoms: F (1); Br (1);
  38. 5i7u (Na: 1) - Human DPP4 in Complex with A Novel Tricyclic Hetero-Cycle Inhibitor
    Other atoms: F (2);
  39. 5i8b (Na: 1) - Cbp in Complex with CPD23 ((R)-6-(3-(Benzyloxy)Phenyl)-4-Methyl-1,3,4, 5-Tetrahydro-2H-Benzo[B][1,4]Diazepin-2-One)
    Other atoms: Zn (3);
  40. 5i8f (Na: 3) - Crystal Structure of St. John'S Wort Hyp-1 Protein in Complex with Melatonin
Page generated: Wed Nov 4 05:34:07 2020

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