Sodium in PDB, part 148 (files: 5881-5920),
PDB 5hn3-5i9b
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5881-5920 (PDB 5hn3-5i9b).
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5hn3 (Na: 1) - Crystal Structure of Beta-Decarboxylating Dehydrogenase (TK0280) From Thermococcus Kodakarensis (Apo Form)
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5hnj (Na: 2) - Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex
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5hp4 (Na: 1) - Crystal Structure Bacteriohage T5 D15 Flap Endonuclease (D155K) Pseudo-Enzyme-Product Complex with Dna and Metal Ions
Other atoms:
K (1);
Ca (2);
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5hpr (Na: 1) - Insulin with Proline Analog Hyp at Position B28 in the T2 State
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5hrt (Na: 1) - Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer
Other atoms:
K (1);
Zn (2);
Ca (2);
Cl (1);
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5hs6 (Na: 1) - Human 17BETA-Hydroxysteroid Dehydrogenase Type 14 in Complex with Estrone
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5hsx (Na: 2) - Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans
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5htb (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Bisubstrate Inhibitor Arc-3353
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5htc (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Bisubstrate Inhibitor Arc-3372
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5hut (Na: 2) - Structure of Candida Albicans Trehalose-6-Phosphate Synthase in Complex with Udp-Glucose
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5hvd (Na: 3) - Full Length Open-Form Sodium Channel Navms I218C
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5hvx (Na: 3) - Full Length Wild-Type Open-Form Sodium Channel Navms
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5hwx (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 2.5 Mm Na+ and Zero CA2+
Other atoms:
Cl (1);
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5hwy (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 10 Mm Na+ and Zero CA2+
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5hxa (Na: 2) - Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans
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5hxc (Na: 3) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 20 Mm Na+ and Zero CA2+
Other atoms:
Ca (2);
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5hxe (Na: 4) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 100 Mm Na+ and Zero CA2+
Other atoms:
Cl (2);
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5hxi (Na: 2) - 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, 5HN Bound
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5hxu (Na: 2) - Structure-Function Analysis of Functionally Diverse Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes
Other atoms:
Cl (2);
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5hxz (Na: 4) - Structure-Function Analysis of Functionally Diverse Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes
Other atoms:
Cl (4);
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5hy1 (Na: 1) - High Resolution Structure of Barbiturase
Other atoms:
Cl (3);
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5hya (Na: 3) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium EXCHANGERNCX_MJ Soaked with 150 Mm Na+ and Nominal CA2+
Other atoms:
Ca (1);
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5hz7 (Na: 5) - High-Resolution Crystal Structure of the Minor Dna-Binding Pilin Comp From Neisseria Meningitidis in Fusion with Mbp
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5hzr (Na: 1) - Crystal Structure of MTSNF2
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5i1t (Na: 1) - 2.6 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Complex with Triacetylchitotriose
Other atoms:
Cl (1);
Zn (1);
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5i3j (Na: 4) - Structure-Function Studies on Role of Hydrophobic Clamping of A Basic Glutamate in Catalysis By Triosephosphate Isomerase
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5i3k (Na: 3) - Structure-Function Studies on Role of Hydrophobic Clamping of A Basic Glutamate in Catalysis By Triosephosphate Isomerase
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5i3l (Na: 1) - DPF3B in Complex with H3K14AC Peptide
Other atoms:
Zn (8);
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5i5a (Na: 1) - Quasi Racemic Structure of Allo-ILE7-Shk and D-Shk
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5i6x (Na: 1) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with Paroxetine at the Central Site
Other atoms:
F (1);
Cl (1);
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5i71 (Na: 2) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with S-Citalopram at the Central Site
Other atoms:
F (1);
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5i73 (Na: 2) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with S-Citalopram at the Central and Allosteric Sites
Other atoms:
F (2);
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5i75 (Na: 1) - X-Ray Structure of the TS3 Human Serotonin Transporter Complexed with S-Citalopram at the Central Site and Br-Citalopram at the Allosteric Site
Other atoms:
F (1);
Br (1);
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5i7u (Na: 1) - Human DPP4 in Complex with A Novel Tricyclic Hetero-Cycle Inhibitor
Other atoms:
F (2);
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5i8b (Na: 1) - Cbp in Complex with CPD23 ((R)-6-(3-(Benzyloxy)Phenyl)-4-Methyl-1,3,4, 5-Tetrahydro-2H-Benzo[B][1,4]Diazepin-2-One)
Other atoms:
Zn (3);
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5i8f (Na: 3) - Crystal Structure of St. John'S Wort Hyp-1 Protein in Complex with Melatonin
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5i8g (Na: 1) - Cbp in Complex with CPD637 ((R)-4-Methyl-6-(1-Methyl-3-(1-Methyl-1H- Pyrazol-4-Yl)-1H-Indazol-5-Yl)-1,3,4,5-Tetrahydro-2H-Benzo[B][1, 4]Diazepin-2-One)
Other atoms:
Zn (3);
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5i8u (Na: 2) - Crystal Structure of the RV1700 (Mt Adprase) E142Q Mutant
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5i96 (Na: 2) - Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with Ag-221 (Enasidenib) Inhibitor.
Other atoms:
F (12);
Ca (2);
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5i9b (Na: 1) - Caspase 3 V266A
Page generated: Thu Dec 28 11:22:31 2023
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