Sodium in PDB 5hvx: Full Length Wild-Type Open-Form Sodium Channel Navms

The structure of Full Length Wild-Type Open-Form Sodium Channel Navms, PDB code: 5hvx was solved by A.Sula, J.E.Booker, C.E.Naylor, B.A.Wallace, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.67 / 2.45
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	109.000, 109.000, 210.590, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 23.3

The binding sites of Sodium atom in the Full Length Wild-Type Open-Form Sodium Channel Navms (pdb code 5hvx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Full Length Wild-Type Open-Form Sodium Channel Navms, PDB code: 5hvx:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Full Length Wild-Type Open-Form Sodium Channel Navms


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Full Length Wild-Type Open-Form Sodium Channel Navms within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:0.5 occ:0.25 O A:HOH402 4.3 56.2 1.0 NA A:NA302 4.3 85.4 0.2 O A:THR176 4.9 48.6 1.0

Sodium binding site 2 out of 3 in the Full Length Wild-Type Open-Form Sodium Channel Navms


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Full Length Wild-Type Open-Form Sodium Channel Navms within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:85.4 occ:0.25 NA A:NA303 2.6 89.7 0.2 O A:HOH402 3.2 56.2 1.0 O A:LEU177 4.2 48.0 1.0 NA A:NA301 4.3 0.5 0.3 C A:LEU177 5.0 47.5 1.0 CA A:GLU178 5.0 42.4 1.0

Sodium binding site 3 out of 3 in the Full Length Wild-Type Open-Form Sodium Channel Navms


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Full Length Wild-Type Open-Form Sodium Channel Navms within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:89.7 occ:0.25 NA A:NA302 2.6 85.4 0.2 N A:SER179 4.6 44.8 1.0 OE2 A:GLU178 4.6 60.0 1.0 O A:HOH402 4.8 56.2 1.0 OG A:SER179 4.9 54.4 1.0 O A:LEU177 5.0 48.0 1.0

A.Sula, J.Booker, L.C.Ng, C.E.Naylor, P.G.Decaen, B.A.Wallace. The Complete Structure of An Activated Open Sodium Channel. Nat Commun V. 8 14205 2017.
ISSN: ESSN 2041-1723
PubMed: 28205548
DOI: 10.1038/NCOMMS14205