Sodium in PDB 6j0h: Crystal Structure of Actinomycin D- D(Ttggcgaa) Complex

The structure of Crystal Structure of Actinomycin D- D(Ttggcgaa) Complex, PDB code: 6j0h was solved by R.B.Satange, M.H.Hou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.61 / 1.52
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	59.500, 59.500, 93.489, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 21.6

The binding sites of Sodium atom in the Crystal Structure of Actinomycin D- D(Ttggcgaa) Complex (pdb code 6j0h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Actinomycin D- D(Ttggcgaa) Complex, PDB code: 6j0h:

Sodium binding site 1 out of 1 in the Crystal Structure of Actinomycin D- D(Ttggcgaa) Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Actinomycin D- D(Ttggcgaa) Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na101 b:40.4 occ:0.50 O A:HOH242 2.6 51.6 0.5 O4 A:DT1 2.7 25.2 1.0 O A:HOH206 3.1 35.7 1.0 C7 A:DT1 3.5 37.4 1.0 C4 A:DT1 3.6 27.9 1.0 C5 A:DT1 4.1 30.7 1.0 O4 A:DT2 4.4 22.9 1.0 O A:HOH239 4.5 54.8 1.0 O A:HOH241 4.8 50.4 1.0 N3 A:DT1 4.8 27.2 1.0

R.Satange, C.Y.Chuang, S.Neidle, M.H.Hou. Polymorphic G:G Mismatches Act As Hotspots For Inducing Right-Handed Z Dna By Dna Intercalation. Nucleic Acids Res. V. 47 8899 2019.
ISSN: ESSN 1362-4962
PubMed: 31361900
DOI: 10.1093/NAR/GKZ653