Sodium in PDB 5hsx: Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans

The structure of Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans, PDB code: 5hsx was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.10 / 1.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	109.190, 132.600, 55.570, 90.00, 90.00, 90.00
R / Rfree (%)	15.5 / 18.1

The binding sites of Sodium atom in the Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans (pdb code 5hsx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans, PDB code: 5hsx:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:38.9 occ:1.00 NE2 A:HIS115 2.2 27.2 1.0 O A:HOH722 2.3 46.7 1.0 O A:HOH559 2.4 36.9 1.0 CE1 A:HIS265 2.6 28.9 1.0 O A:HOH731 2.8 38.0 1.0 NE2 A:HIS265 2.9 26.9 1.0 CD2 A:HIS115 3.1 26.4 1.0 CE1 A:HIS115 3.2 24.7 1.0 OD1 A:ASP117 3.6 39.1 1.0 ND1 A:HIS265 3.7 27.7 1.0 CG A:ASP117 3.9 36.1 1.0 OD2 A:ASP117 4.0 35.8 1.0 O A:HOH743 4.1 42.5 1.0 O A:HOH719 4.1 22.0 1.0 CD2 A:HIS265 4.2 23.6 1.0 ND1 A:HIS115 4.3 20.4 1.0 CG A:HIS115 4.3 22.9 1.0 CG A:HIS265 4.6 23.4 1.0 O A:HOH648 4.7 40.1 1.0 O A:HOH771 4.8 41.1 1.0 CA A:ASP117 4.9 21.3 1.0 CB A:ASP117 4.9 23.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans within 5.0Å range: probe atom residue distance (Å) B Occ B:Na401 b:17.3 occ:1.00 NE2 B:HIS115 2.0 27.7 1.0 O B:ASN315 2.2 60.9 1.0 NE2 B:HIS265 2.2 29.1 1.0 O B:HOH528 2.2 31.6 1.0 OD1 B:ASP117 2.3 36.7 1.0 O B:HOH705 2.4 33.7 1.0 CE1 B:HIS265 2.9 27.1 1.0 CD2 B:HIS115 3.0 24.1 1.0 CE1 B:HIS115 3.0 24.9 1.0 C B:ASN315 3.0 59.0 1.0 OXT B:ASN315 3.2 60.0 1.0 CG B:ASP117 3.3 36.3 1.0 CD2 B:HIS265 3.4 27.4 1.0 OD2 B:ASP117 3.8 43.0 1.0 ND1 B:HIS115 4.1 22.0 1.0 ND1 B:HIS265 4.1 25.8 1.0 CG B:HIS115 4.1 22.4 1.0 O B:HOH712 4.3 65.1 1.0 CG B:HIS265 4.3 23.4 1.0 CA B:ASN315 4.4 56.1 1.0 O B:HOH655 4.4 40.6 1.0 O B:HOH747 4.5 45.8 1.0 O B:HOH694 4.5 36.0 1.0 CB B:ASP117 4.6 26.4 1.0 CB B:ASN315 4.7 52.8 1.0 CA B:ASP117 4.8 23.6 1.0

Ssgcid, D.M.Dranow, S.J.Mayclin, D.Lorimer, T.E.Edwards. Crystal Structure of A Putative Alpha-Ketoglutarate-Dependent Taurine Dioxygenase From Burkholderia Xenovorans To Be Published.