Sodium in PDB, part 133 (files: 5281-5320),
PDB 4yil-4z48
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5281-5320 (PDB 4yil-4z48).
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4yil (Na: 1) - OYE1 W116A Complexed with (Z)-Methyl 3-Cyano-3-(4-Fluorophenyl) Acrylate in A Non Productive Binding Mode
Other atoms:
F (1);
Mg (1);
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4ym8 (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
Other atoms:
Cl (1);
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4ym9 (Na: 1) - Crystal Structure of Porcine Pancreatic Elastase (Ppe) in Complex with the Novel Inhibitor JM102
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4ymm (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 7BG As the Template Base in A 1-Nucleotide Gapped Dna
Other atoms:
F (1);
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4ymn (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with N7BG in the Template Base Paired with Incoming Non-Hydrolyzable Ctp
Other atoms:
F (1);
Mg (1);
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4ymo (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with N7BG in the Template Opposite to Incoming Non-Hydrolyzable Ctp with Manganese in the Active Site
Other atoms:
F (1);
Mn (2);
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4ymq (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat + SRC2 Peptide with A Benzothiadiazole Dioxide Inverse Agonist
Other atoms:
F (6);
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4yn4 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with N7BG in the Template Opposite to Incoming Non-Hydrolyzable Dttp with Manganese in the Active Site
Other atoms:
F (1);
Mn (2);
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4yni (Na: 1) - Iron Free Succinate Bound Rat Cysteine Dioxygenase
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4yo7 (Na: 1) - Crystal Structure of An Abc Transporter Solute Binding Protein (IPR025997) From Bacillus Halodurans C-125 (BH2323, Target Efi- 511484) with Bound Myo-Inositol
Other atoms:
Mg (3);
Cl (1);
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4yop (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
Other atoms:
Cl (1);
-
4yoq (Na: 1) - Crystal Structure of Muty Bound to Its Anti-Substrate
Other atoms:
Fe (4);
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4yph (Na: 1) - Crystal Structure of Muty Bound to Its Anti-Substrate with the Disulfide Cross-Linker Reduced
Other atoms:
Fe (4);
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4ypo (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Ketol-Acid Reductoisomerase in Complex with MG2+
Other atoms:
Mg (13);
Cl (2);
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4ys6 (Na: 5) - Crystal Structure of An Abc Transporter Solute Binding Protein (IPR025997) From Clostridium Phytofermentans (CPHY_1585, Target Efi- 511156) with Bound Beta-D-Glucose
Other atoms:
Cl (2);
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4ysa (Na: 1) - Completely Oxidized Structure of Copper Nitrite Reductase From Geobacillus Thermodenitrificans
Other atoms:
Cu (8);
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4yt9 (Na: 1) - Crystal Structure of Porphyromonas Gingivalis Peptidylarginine Deiminase (Ppad) Substrate-Unbound.
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4ytb (Na: 1) - Crystal Structure of Porphyromonas Gingivalis Peptidylarginine Deiminase (Ppad) in Complex with Dipeptide Asp-Gln.
Other atoms:
Cl (1);
-
4ytg (Na: 1) - Crystal Structure of Porphyromonas Gingivalis Peptidylarginine Deiminase (Ppad) Mutant C351A in Complex with Dipeptide Met-Arg.
Other atoms:
Cl (1);
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4yu6 (Na: 2) - Crystal Structure of Bacillus Anthracis Immune Inhibitor A2 Peptidase Zymogen
Other atoms:
K (2);
Zn (2);
Ca (9);
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4yuc (Na: 1) - Crystal Structure of Corb Derivatized with S-(2-Acetamidoethyl) 4- Methyl-3-Oxohexanethioate
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4yvd (Na: 1) - Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1)
Other atoms:
Cl (5);
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4yw8 (Na: 1) - Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid
Other atoms:
Mn (2);
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4yw9 (Na: 1) - Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid and Gtp
Other atoms:
Mn (3);
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4ywb (Na: 2) - Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid and Oxalic Acid
Other atoms:
Mn (4);
Cl (2);
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4ywd (Na: 1) - Structure of Rat Cytosolic Pepck in Complex with 2,3-Pyridine Dicarboxylic Acid
Other atoms:
Mn (2);
-
4yxh (Na: 1) - Crystal Structure of Deer Prion Protein Complexed with POM1 Fab
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4yxk (Na: 1) - Crystal Structure of Elk Prion Protein Complexed with POM1 Fab
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4yxl (Na: 1) - Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab
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4yxw (Na: 1) - Bovine Heart Mitochondrial F1-Atpase Inhibited By Amp-Pnp and Adp in the Presence of Thiophosphate.
Other atoms:
Mg (5);
Cl (1);
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4yy2 (Na: 8) - Computationally Designed Left-Handed Alpha/Alpha Toroid with 3 Repeats in Space Group P212121
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4yyf (Na: 3) - The Crystal Structure of A Glycosyl Hydrolase of GH3 Family Member From [Mycobacterium Smegmatis Str. MC2 155
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4yzu (Na: 1) - Rapid Development of Two Factor Ixa Inhibitors From Hit to Lead
Other atoms:
Cl (1);
-
4z0k (Na: 1) - Rapid Development of Two Factor Ixa Inhibitors From Hit to Lead
Other atoms:
Cl (1);
-
4z0n (Na: 1) - Crystal Structure of A Periplasmic Solute Binding Protein (IPR025997) From Streptobacillus Moniliformis Dsm-12112 (SMON_0317, Target Efi- 511281) with Bound D-Galactose
Other atoms:
Ca (1);
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4z0o (Na: 1) - Cw-Type Zinc Finger of ZCWPW2 with F78D Mutation
Other atoms:
Zn (1);
-
4z2i (Na: 1) - Serratia Marcescens Chitinase B Complexed with Macrolide Inhibitor 30
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4z3u (Na: 1) - Prv Nuclear Egress Complex
Other atoms:
Zn (2);
Cl (5);
-
4z46 (Na: 2) - X-Ray Structure of the Bis-Platinum Lysozyme Adduct Formed in the Reaction Between the Protein and the Two Drugs Cisplatin and Oxaliplatin
Other atoms:
Pt (2);
Cl (1);
-
4z48 (Na: 1) - Crystal Structure of A DUF1329 Family Protein (DESPIG_00262) From Desulfovibrio Piger Atcc 29098 at 1.75 A Resolution
Other atoms:
I (7);
Cl (2);
Page generated: Thu Dec 28 11:21:21 2023
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