Atomistry » Sodium » PDB 4yhq-4z2i
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Sodium in PDB, part 133 (files: 5281-5320), PDB 4yhq-4z2i

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5281-5320 (PDB 4yhq-4z2i).
  1. 4yhq (Na: 1) - Crystal Structure of Multidrug Resistant Clinical Isolate PR20 with Grl-5010A
    Other atoms: F (4); Y (4); Cl (5);
  2. 4yi9 (Na: 1) - Crystal Structure of Non-Myristoylated E153A Recoverin at 1.35 A Resolution with A Sodium Ion Bound to Ef-Hand 2 and Calcium Ion Bound to Ef-Hand 3
    Other atoms: Ca (1);
  3. 4yia (Na: 2) - Structural Mechanism of Hormone Release in Thyroxine Binding Globulin
    Other atoms: Cl (3); Ca (2);
  4. 4yil (Na: 1) - OYE1 W116A Complexed with (Z)-Methyl 3-Cyano-3-(4-Fluorophenyl) Acrylate in A Non Productive Binding Mode
    Other atoms: F (1); Mg (1);
  5. 4ym8 (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
    Other atoms: Cl (1);
  6. 4ym9 (Na: 1) - Crystal Structure of Porcine Pancreatic Elastase (Ppe) in Complex with the Novel Inhibitor JM102
  7. 4ymm (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 7BG As the Template Base in A 1-Nucleotide Gapped Dna
    Other atoms: F (1);
  8. 4ymn (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with N7BG in the Template Base Paired with Incoming Non-Hydrolyzable Ctp
    Other atoms: F (1); Mg (1);
  9. 4ymo (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with N7BG in the Template Opposite to Incoming Non-Hydrolyzable Ctp with Manganese in the Active Site
    Other atoms: F (1); Mn (2);
  10. 4ymq (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat + SRC2 Peptide with A Benzothiadiazole Dioxide Inverse Agonist
    Other atoms: F (6);
  11. 4yn4 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with N7BG in the Template Opposite to Incoming Non-Hydrolyzable Dttp with Manganese in the Active Site
    Other atoms: F (1); Mn (2);
  12. 4yni (Na: 1) - Iron Free Succinate Bound Rat Cysteine Dioxygenase
  13. 4yo7 (Na: 1) - Crystal Structure of An Abc Transporter Solute Binding Protein (IPR025997) From Bacillus Halodurans C-125 (BH2323, Target Efi- 511484) with Bound Myo-Inositol
    Other atoms: Mg (3); Cl (1);
  14. 4yop (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
    Other atoms: Cl (1);
  15. 4yoq (Na: 1) - Crystal Structure of Muty Bound to Its Anti-Substrate
    Other atoms: Fe (4);
  16. 4yph (Na: 1) - Crystal Structure of Muty Bound to Its Anti-Substrate with the Disulfide Cross-Linker Reduced
    Other atoms: Fe (4);
  17. 4ypo (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Ketol-Acid Reductoisomerase in Complex with MG2+
    Other atoms: Mg (13); Cl (2);
  18. 4ys6 (Na: 5) - Crystal Structure of An Abc Transporter Solute Binding Protein (IPR025997) From Clostridium Phytofermentans (CPHY_1585, Target Efi- 511156) with Bound Beta-D-Glucose
    Other atoms: Cl (2);
  19. 4ysa (Na: 1) - Completely Oxidized Structure of Copper Nitrite Reductase From Geobacillus Thermodenitrificans
    Other atoms: Cu (8);
  20. 4yt9 (Na: 1) - Crystal Structure of Porphyromonas Gingivalis Peptidylarginine Deiminase (Ppad) Substrate-Unbound.
  21. 4ytb (Na: 1) - Crystal Structure of Porphyromonas Gingivalis Peptidylarginine Deiminase (Ppad) in Complex with Dipeptide Asp-Gln.
    Other atoms: Cl (1);
  22. 4ytg (Na: 1) - Crystal Structure of Porphyromonas Gingivalis Peptidylarginine Deiminase (Ppad) Mutant C351A in Complex with Dipeptide Met-Arg.
    Other atoms: Cl (1);
  23. 4yu6 (Na: 2) - Crystal Structure of Bacillus Anthracis Immune Inhibitor A2 Peptidase Zymogen
    Other atoms: K (2); Zn (2); Ca (9);
  24. 4yuc (Na: 1) - Crystal Structure of Corb Derivatized with S-(2-Acetamidoethyl) 4- Methyl-3-Oxohexanethioate
  25. 4yvd (Na: 1) - Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1)
    Other atoms: Cl (5);
  26. 4yw8 (Na: 1) - Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid
    Other atoms: Mn (2);
  27. 4yw9 (Na: 1) - Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid and Gtp
    Other atoms: Mn (3);
  28. 4ywb (Na: 2) - Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid and Oxalic Acid
    Other atoms: Mn (4); Cl (2);
  29. 4ywd (Na: 1) - Structure of Rat Cytosolic Pepck in Complex with 2,3-Pyridine Dicarboxylic Acid
    Other atoms: Mn (2);
  30. 4yxh (Na: 1) - Crystal Structure of Deer Prion Protein Complexed with POM1 Fab
  31. 4yxk (Na: 1) - Crystal Structure of Elk Prion Protein Complexed with POM1 Fab
  32. 4yxl (Na: 1) - Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab
  33. 4yxw (Na: 1) - Bovine Heart Mitochondrial F1-Atpase Inhibited By Amp-Pnp and Adp in the Presence of Thiophosphate.
    Other atoms: Mg (5); Cl (1);
  34. 4yy2 (Na: 8) - Computationally Designed Left-Handed Alpha/Alpha Toroid with 3 Repeats in Space Group P212121
  35. 4yyf (Na: 3) - The Crystal Structure of A Glycosyl Hydrolase of GH3 Family Member From [Mycobacterium Smegmatis Str. MC2 155
  36. 4yzu (Na: 1) - Rapid Development of Two Factor Ixa Inhibitors From Hit to Lead
    Other atoms: Cl (1);
  37. 4z0k (Na: 1) - Rapid Development of Two Factor Ixa Inhibitors From Hit to Lead
    Other atoms: Cl (1);
  38. 4z0n (Na: 1) - Crystal Structure of A Periplasmic Solute Binding Protein (IPR025997) From Streptobacillus Moniliformis Dsm-12112 (SMON_0317, Target Efi- 511281) with Bound D-Galactose
    Other atoms: Ca (1);
  39. 4z0o (Na: 1) - Cw-Type Zinc Finger of ZCWPW2 with F78D Mutation
    Other atoms: Zn (1);
  40. 4z2i (Na: 1) - Serratia Marcescens Chitinase B Complexed with Macrolide Inhibitor 30
Page generated: Fri Dec 24 09:47:29 2021

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