Atomistry » Sodium » PDB 4yhq-4z2i » 4yvd
Atomistry »
  Sodium »
    PDB 4yhq-4z2i »
      4yvd »

Sodium in PDB 4yvd: Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1)

Protein crystallography data

The structure of Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1), PDB code: 4yvd was solved by A.Dong, H.Zeng, C.Xu, W.Tempel, Y.Li, H.He, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, J.Min, H.Wu, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.55 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 158.330, 34.185, 48.818, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22

Other elements in 4yvd:

The structure of Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1) also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1) (pdb code 4yvd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1), PDB code: 4yvd:

Sodium binding site 1 out of 1 in 4yvd

Go back to Sodium Binding Sites List in 4yvd
Sodium binding site 1 out of 1 in the Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na601

b:25.0
occ:1.00
O A:TYR292 2.7 24.5 1.0
O A:HOH784 2.7 23.0 1.0
O A:HOH782 2.7 32.0 1.0
O A:ARG250 2.8 23.2 1.0
O A:HOH825 3.0 18.1 1.0
O A:HOH738 3.0 26.3 0.5
O A:HOH738 3.2 24.5 0.5
CA A:GLY293 3.7 19.2 1.0
C A:TYR292 3.8 23.9 1.0
C A:ARG250 3.9 24.2 1.0
N A:GLY293 4.2 20.0 1.0
O A:HOH740 4.3 32.5 1.0
CA A:GLY251 4.4 19.1 1.0
N A:GLY251 4.6 20.1 1.0
O A:HOH775 4.6 40.1 1.0
O A:HOH809 4.6 39.0 1.0
O A:HOH778 4.7 23.6 1.0
O A:ALA334 4.7 21.0 1.0
O A:HOH811 4.7 22.9 1.0
UNK A:UNX612 4.7 30.0 1.0
CB A:ARG250 4.8 22.6 1.0
O A:HOH813 4.8 26.7 1.0
CA A:ARG250 4.9 21.6 1.0
O A:HOH785 4.9 29.8 1.0
CB A:CYS209 5.0 23.5 1.0
C A:GLY293 5.0 21.3 1.0
O A:HOH761 5.0 43.6 1.0
O A:ARG208 5.0 27.7 1.0

Reference:

H.Zeng, A.Dong, C.Xu, W.Tempel, Y.Li, H.He, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, J.Min, H.Wu, Structural Genomics Consortium (Sgc). Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1). To Be Published.
Page generated: Tue Dec 15 10:04:37 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy