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Sodium in PDB 4yw8: Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid

Enzymatic activity of Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid

All present enzymatic activity of Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid:
4.1.1.32;

Protein crystallography data

The structure of Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid, PDB code: 4yw8 was solved by M.D.Balan, T.A.Johnson, M.J.Mcleod, W.R.Lotosky, T.Holyoak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.18 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.540, 119.422, 60.488, 90.00, 110.24, 90.00
R / Rfree (%) 18 / 22.1

Other elements in 4yw8:

The structure of Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid (pdb code 4yw8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid, PDB code: 4yw8:

Sodium binding site 1 out of 1 in 4yw8

Go back to Sodium Binding Sites List in 4yw8
Sodium binding site 1 out of 1 in the Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Rat Cytosolic Pepck in Complex with 3-Mercaptopicolinic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na703

b:30.5
occ:1.00
 O A:ASN208 2.1 24.3 1.0
O A:HOH1637 2.3 29.2 1.0
O A:HOH1678 2.3 28.9 1.0
O A:LEU79 2.3 24.1 1.0
O A:HOH1902 2.4 35.9 1.0
C A:ASN208 3.3 26.8 1.0
C A:LEU79 3.4 22.3 1.0
CB A:ASN208 3.9 31.7 1.0
N A:LEU79 4.0 18.6 1.0
CB A:LEU79 4.0 22.2 1.0
CA A:LEU79 4.0 20.9 1.0
O A:VAL65 4.1 24.9 1.0
CA A:ASN208 4.1 28.2 1.0
CB A:ASN209 4.2 27.8 1.0
C A:ASN209 4.2 23.9 1.0
O A:ASN209 4.3 24.4 1.0
N A:ASN209 4.3 25.8 1.0
O A:HOH1886 4.4 40.4 1.0
O A:HOH2017 4.4 41.5 1.0
CA A:ASN209 4.4 25.7 1.0
O A:GLY64 4.5 35.6 1.0
CB A:TRP210 4.5 19.0 1.0
N A:THR80 4.5 20.3 1.0
N A:TRP210 4.6 21.6 1.0
C A:VAL65 4.8 27.1 1.0
CA A:THR80 4.9 20.5 1.0
CA A:VAL65 4.9 30.8 1.0
O A:HOH1884 4.9 42.1 1.0
CA A:TRP210 5.0 19.1 1.0

Reference:

M.D.Balan, M.J.Mcleod, W.R.Lotosky, M.Ghaly, T.Holyoak. Inhibition and Allosteric Regulation of Monomeric Phosphoenolpyruvate Carboxykinase By 3-Mercaptopicolinic Acid. Biochemistry V. 54 5878 2015.
ISSN: ISSN 0006-2960
PubMed: 26322521
DOI: 10.1021/ACS.BIOCHEM.5B00822
Page generated: Tue Dec 15 10:04:39 2020

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