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Sodium in PDB 4z3u: Prv Nuclear Egress Complex

Protein crystallography data

The structure of Prv Nuclear Egress Complex, PDB code: 4z3u was solved by J.M.Bigalke, E.E.Heldwein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.91 / 2.71
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 125.456, 125.456, 109.235, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 27.3

Other elements in 4z3u:

The structure of Prv Nuclear Egress Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Chlorine (Cl) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Prv Nuclear Egress Complex (pdb code 4z3u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Prv Nuclear Egress Complex, PDB code: 4z3u:

Sodium binding site 1 out of 1 in 4z3u

Go back to Sodium Binding Sites List in 4z3u
Sodium binding site 1 out of 1 in the Prv Nuclear Egress Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Prv Nuclear Egress Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na201

b:82.7
occ:1.00
O C:GLU100 2.0 99.6 1.0
C C:GLU100 3.0 0.7 1.0
O C:ALA99 3.2 89.1 1.0
CA C:GLU100 3.6 0.8 1.0
ND2 C:ASN102 3.6 62.1 1.0
CB D:ALA57 3.9 36.0 1.0
CG2 D:ILE54 4.0 60.6 1.0
C C:ALA99 4.0 91.9 1.0
N C:HIS101 4.1 88.1 1.0
N C:GLU100 4.2 97.3 1.0
CL C:CL202 4.3 0.8 1.0
CG C:ASN102 4.4 60.3 1.0
CA C:HIS101 4.6 64.5 1.0
N C:ASN102 4.7 61.9 1.0
CB D:ILE54 4.7 55.1 1.0
CB C:GLU100 4.8 0.2 1.0
OD1 C:ASN102 4.9 55.8 1.0
CG1 D:ILE54 5.0 46.2 1.0

Reference:

J.M.Bigalke, E.E.Heldwein. Structural Basis of Membrane Budding By the Nuclear Egress Complex of Herpesviruses. Embo J. V. 34 2921 2015.
ISSN: ESSN 1460-2075
PubMed: 26511020
DOI: 10.15252/EMBJ.201592359
Page generated: Tue Dec 15 10:05:20 2020

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