Sodium in PDB 4yxl: Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab

The structure of Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab, PDB code: 4yxl was solved by P.K.Baral, M.Swayampakula, M.N.G.James, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.24 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.916, 105.969, 76.326, 90.00, 95.37, 90.00
R / Rfree (%)	26.2 / 31

The binding sites of Sodium atom in the Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab (pdb code 4yxl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab, PDB code: 4yxl:

Sodium binding site 1 out of 1 in the Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Syrian Hamster Prion Protein Complexed with POM1 Fab within 5.0Å range: probe atom residue distance (Å) B Occ L:Na301 b:55.6 occ:1.00 OE1 L:GLU79 2.3 95.7 1.0 OE2 L:GLU79 2.4 95.8 1.0 CD L:GLU79 2.7 94.7 1.0 OE1 L:GLU81 3.4 87.5 1.0 OE2 L:GLU81 3.5 89.0 1.0 CD L:GLU81 3.8 87.9 1.0 CG L:GLU79 4.2 90.3 1.0 NH1 L:ARG61 4.7 82.6 1.0 CB L:GLU79 4.9 87.5 1.0 NH2 L:ARG61 5.0 90.8 1.0

P.K.Baral, M.Swayampakula, A.Aguzzi, M.N.James. X-Ray Structural and Molecular Dynamical Studies of the Globular Domains of Cow, Deer, Elk and Syrian Hamster Prion Proteins. J.Struct.Biol. V. 192 37 2015.
ISSN: ESSN 1095-8657
PubMed: 26320075
DOI: 10.1016/J.JSB.2015.08.014