Sodium in PDB 4yni: Iron Free Succinate Bound Rat Cysteine Dioxygenase

All present enzymatic activity of Iron Free Succinate Bound Rat Cysteine Dioxygenase:
1.13.11.20;

The structure of Iron Free Succinate Bound Rat Cysteine Dioxygenase, PDB code: 4yni was solved by M.Fellner, E.P.Tchesnokov, G.N.L.Jameson, S.M.Wilbanks, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.89 / 2.40
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.690, 57.690, 121.870, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 22.4

The binding sites of Sodium atom in the Iron Free Succinate Bound Rat Cysteine Dioxygenase (pdb code 4yni). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Iron Free Succinate Bound Rat Cysteine Dioxygenase, PDB code: 4yni:

Sodium binding site 1 out of 1 in the Iron Free Succinate Bound Rat Cysteine Dioxygenase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Iron Free Succinate Bound Rat Cysteine Dioxygenase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:46.8 occ:1.00 OD1 A:ASP135 2.2 35.2 1.0 ND1 A:HIS88 2.6 32.3 1.0 O A:GLY138 3.0 37.2 1.0 N A:HIS88 3.3 34.3 1.0 N A:ASP135 3.4 34.6 1.0 CG A:ASP135 3.4 36.3 1.0 CE1 A:HIS88 3.5 34.8 1.0 CA A:ASP135 3.5 36.1 1.0 CA A:ASP87 3.5 34.4 1.0 CG A:HIS88 3.6 36.9 1.0 C A:ASN134 3.6 35.6 1.0 C A:ASP87 3.7 32.5 1.0 CB A:HIS88 3.8 37.1 1.0 O A:ASN134 3.8 35.5 1.0 CB A:ASP135 4.1 32.9 1.0 CB A:ASP87 4.1 31.6 1.0 C A:GLY138 4.1 35.6 1.0 CA A:HIS88 4.2 30.6 1.0 CA A:ASN134 4.2 39.1 1.0 O A:HIS86 4.3 35.0 1.0 OD2 A:ASP135 4.4 32.8 1.0 CA A:LEU139 4.5 33.0 1.0 CD1 A:ILE133 4.6 31.0 1.0 O A:ASP87 4.6 31.1 1.0 CG1 A:ILE133 4.6 37.3 1.0 NE2 A:HIS88 4.6 40.2 1.0 CD2 A:HIS88 4.7 31.9 1.0 N A:ASP87 4.7 36.9 1.0 CD2 A:LEU139 4.7 30.5 1.0 N A:ASN134 4.7 36.0 1.0 N A:LEU139 4.8 35.8 1.0 CG2 A:ILE133 4.8 30.8 1.0 C A:ASP135 4.8 36.8 1.0 C A:HIS86 4.9 36.0 1.0

M.Fellner, E.P.Tchesnokov, G.N.L.Jameson, S.M.Wilbanks. Iron Free Succinate Bound Rat Cysteine Dioxygenase To Be Published.