Sodium in PDB, part 108 (files: 4281-4320),
PDB 4jvl-4khs
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 4281-4320 (PDB 4jvl-4khs).
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4jvl (Na: 3) - Crystal Structure of Human Estrogen Sulfotransferase (SULT1E1) in Complex with Inactive Cofactor Pap and Estradiol (E2)
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4jvm (Na: 3) - Crystal Structure of Human Estrogen Sulfotransferase (SULT1E1) in Complex with Inactive Cofactor Pap and Brominated Flame Retardant Tbbpa (Tetrabromobisphenol A)
Other atoms:
Br (8);
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4jvn (Na: 2) - Crystal Structure of Human Estrogen Sulfotransferase (SULT1E1) in Complex with Inactive Cofactor Pap and Metabolite of Brominated Flame Retardant 3OH BDE47 (3-Hydroxyl Bromodiphenyl Ether)
Other atoms:
Br (6);
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4jwm (Na: 2) - Ternary Complex of D256E Mutant of Dna Polymerase Beta
Other atoms:
Mg (2);
Cl (4);
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4jwn (Na: 2) - Ternary Complex of D256A Mutant of Dna Polymerase Beta
Other atoms:
Mg (1);
Cl (4);
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4jzb (Na: 2) - Crystal Structure of Leshmaniasis Major Farnesyl Diphosphate Synthase in Complex with 1-(2-Hydroxy-2,2-Diphosphonoethyl)-3- Phenylpyridinium, Ipp and CA2+
Other atoms:
Ca (6);
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4jzy (Na: 1) - Crystal Structures of Drosophila Cryptochrome
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4jzz (Na: 6) - Crystal Structure of CD4-Mimetic Miniprotein M48U1 in Complex with Hiv-1 YU2 GP120 in C2221 Space Group
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4k0d (Na: 1) - Periplasmic Sensor Domain of Sensor Histidine Kinase, ADEH_2942
Other atoms:
Cl (4);
Zn (5);
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4k0w (Na: 5) - X-Ray Crystal Structure of Oxa-23 A220 Duplication Clinical Variant
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4k10 (Na: 6) - Crystal Structure of Leshmaniasis Major Farnesyl Diphosphate Synthase in Complex with 3-Fluoro-1-(2-Hydroxy-2,2-Diphosphonoethyl)Pyridinium and MG2+
Other atoms:
F (4);
Mg (8);
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4k19 (Na: 2) - The Structure of Human Siderocalin Bound to the Bacterial Siderophore Fluvibactin
Other atoms:
Fe (3);
Cl (2);
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4k28 (Na: 1) - 2.15 Angstrom Resolution Crystal Structure of A Shikimate Dehydrogenase Family Protein From Pseudomonas Putida KT2440 in Complex with Nad+
Other atoms:
Mn (6);
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4k3i (Na: 4) - Crystal Structure of the Quinol Form of Methylamine Dehydrogenase in Complex with the Diferrous Form of Maug, C2 Space Group
Other atoms:
Fe (4);
Ca (2);
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4k6a (Na: 1) - Revised Crystal Structure of Apo-Form of Triosephosphate Isomerase (Tpia) From Escherichia Coli at 1.8 Angstrom Resolution.
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4k6o (Na: 4) - X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
Other atoms:
Mg (16);
Cl (12);
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4k6v (Na: 1) - Crystal Structure of AD37 Fiber Knob in Complex with Trivalent Sialic Acid Inhibitor ME0407
Other atoms:
Cl (3);
Zn (3);
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4k70 (Na: 21) - Crystal Structure of N-Terminal Half of Pseudorabiesvirus UL37 Protein
Other atoms:
Ni (1);
Ca (6);
Cl (5);
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4k7t (Na: 1) - Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate
Other atoms:
Zn (1);
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4k7v (Na: 2) - OYE1-W116A Complexed with (R)-Carvone
Other atoms:
Mg (1);
Cl (1);
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4k7x (Na: 1) - Crystal Structure of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, with Bound Phosphate, Closed Domains
Other atoms:
Cl (1);
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4k7y (Na: 1) - OYE1-W116T
Other atoms:
Mg (3);
Cl (2);
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4k8e (Na: 4) - OYE1-W116V Complexed with the Aromatic Product of (R)-Carvone Dismutation
Other atoms:
Mg (2);
Cl (2);
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4k8h (Na: 2) - OYE1-W116V Complexed with (R)-Carvone
Other atoms:
Cl (2);
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4ka7 (Na: 1) - Structure of Organellar Oligopeptidase (E572Q) in Complex with An Endogenous Substrate
Other atoms:
Cl (1);
Zn (1);
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4ka8 (Na: 1) - Structure of Organellar Oligopeptidase
Other atoms:
Cl (1);
Zn (1);
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4ka9 (Na: 2) - Crystal Structure Analysis of Single Amino Acid Deletion Mutations in Egfp
Other atoms:
Zn (2);
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4kaa (Na: 2) - Crystal Structure of the HALOTAG2 Protein at the Resolution 2.3A, Northeast Structural Genomics Consortium (Nesg) Target OR150
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4kaf (Na: 6) - Crystal Structure of Haloalkane Dehalogenase HALOTAG7 at the Resolution 1.5A, Northeast Structural Genomics Consortium (Nesg) Target OR151
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4kaj (Na: 2) - X-Ray Structure of the Complex of Haloalkane Dehalogenase HALOTAG7 with Halts, Northeast Structural Genomics Consortium (Nesg) Target OR151
Other atoms:
Mn (2);
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4kav (Na: 2) - Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis
Other atoms:
Mg (1);
Zn (1);
Cu (1);
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4kb9 (Na: 1) - Crystal Structure of Wild-Type Hiv-1 Protease with Novel Tricyclic P2- Ligands Grl-0739A
Other atoms:
Cl (2);
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4kbf (Na: 2) - Two Different Open Conformations of the Helicase Core of the Rna Helicase Hera
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4kbo (Na: 1) - Crystal Structure of the Human Mortalin (GRP75) Atpase Domain in the Apo Form
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4kca (Na: 2) - Crystal Structure of Endo-1,5-Alpha-L-Arabinanase From A Bovine Ruminal Metagenomic Library
Other atoms:
I (63);
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4kfm (Na: 1) - Crystal Structure of the G Protein-Gated Inward Rectifier K+ Channel GIRK2 (KIR3.2) in Complex with the Beta-Gamma G Protein Subunits
Other atoms:
K (5);
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4kgh (Na: 1) - Crystal Structure of Human SPLUNC1 Lacking the Secretion Signal Sequence
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4khn (Na: 1) - Crystal Structure of the Ternary Complex of the D714A Mutant of RB69 Dna Polymerase
Other atoms:
Ca (2);
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4khq (Na: 8) - Ternary Complex of RB69 Mutant L415F Wit Dumpnpp
Other atoms:
Ca (3);
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4khs (Na: 4) - Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position
Other atoms:
Cl (1);
Ca (3);
Page generated: Sun Dec 15 11:36:51 2024
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