Sodium in PDB 4k6o: X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
Enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
All present enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution:
2.4.2.3;
Protein crystallography data
The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution, PDB code: 4k6o
was solved by
I.I.Prokofev,
A.A.Lashkov,
A.G.Gabdoulkhakov,
C.Betzel,
A.M.Mikhailov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
40.28 /
1.17
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.012,
97.100,
93.017,
90.00,
119.99,
90.00
|
|
R / Rfree (%)
|
10.8 /
12.8
|
Other elements in 4k6o:
The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
(pdb code 4k6o). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the
X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution, PDB code: 4k6o:
Jump to Sodium binding site number:
1;
2;
3;
4;
Sodium binding site 1 out
of 4 in 4k6o
Go back to
Sodium Binding Sites List in 4k6o
Sodium binding site 1 out
of 4 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na306
b:7.5
occ:0.88
|
HG
|
B:SER72
|
2.2
|
8.5
|
0.8
|
|
HG
|
A:SER72
|
2.3
|
9.2
|
0.8
|
|
HB2
|
A:SER72
|
2.5
|
5.6
|
0.2
|
|
HB2
|
B:SER72
|
2.5
|
5.2
|
0.2
|
|
OE1
|
B:GLU48
|
2.6
|
10.8
|
1.0
|
|
OE2
|
A:GLU48
|
2.6
|
9.3
|
1.0
|
|
HG
|
B:SER72
|
2.8
|
4.2
|
0.2
|
|
O
|
A:ILE68
|
2.8
|
7.4
|
1.0
|
|
OG
|
B:SER72
|
2.8
|
7.1
|
0.8
|
|
OG
|
A:SER72
|
2.8
|
7.7
|
0.8
|
|
O
|
B:ILE68
|
2.9
|
7.3
|
1.0
|
|
HB3
|
A:SER72
|
2.9
|
8.8
|
0.8
|
|
HB3
|
B:SER72
|
3.0
|
9.4
|
0.8
|
|
H
|
A:ILE68
|
3.0
|
8.8
|
1.0
|
|
H
|
B:ILE68
|
3.1
|
8.2
|
1.0
|
|
CB
|
A:SER72
|
3.1
|
4.7
|
0.2
|
|
CB
|
B:SER72
|
3.2
|
4.3
|
0.2
|
|
OG
|
A:SER72
|
3.2
|
4.0
|
0.2
|
|
OG
|
B:SER72
|
3.2
|
3.5
|
0.2
|
|
HB3
|
A:SER72
|
3.4
|
5.6
|
0.2
|
|
CB
|
A:SER72
|
3.4
|
7.4
|
0.8
|
|
CB
|
B:SER72
|
3.4
|
7.8
|
0.8
|
|
HB3
|
B:SER72
|
3.4
|
5.2
|
0.2
|
|
HA3
|
A:GLY67
|
3.5
|
9.0
|
1.0
|
|
HA3
|
B:GLY67
|
3.5
|
8.9
|
1.0
|
|
N
|
A:ILE68
|
3.5
|
7.4
|
1.0
|
|
N
|
B:ILE68
|
3.5
|
6.8
|
1.0
|
|
O
|
B:HOH457
|
3.6
|
7.6
|
0.5
|
|
O
|
B:HOH457
|
3.6
|
6.6
|
0.5
|
|
C
|
A:ILE68
|
3.8
|
6.7
|
1.0
|
|
HB2
|
B:SER72
|
3.8
|
9.4
|
0.8
|
|
HB2
|
A:SER72
|
3.8
|
8.8
|
0.8
|
|
CD
|
B:GLU48
|
3.8
|
12.2
|
1.0
|
|
C
|
B:ILE68
|
3.8
|
6.3
|
1.0
|
|
CD
|
A:GLU48
|
3.8
|
11.6
|
1.0
|
|
HB
|
A:ILE68
|
3.8
|
9.9
|
1.0
|
|
HB
|
B:ILE68
|
3.9
|
8.6
|
1.0
|
|
HG
|
A:SER72
|
3.9
|
4.8
|
0.2
|
|
HG3
|
A:GLU48
|
3.9
|
15.6
|
1.0
|
|
HG3
|
B:GLU48
|
4.0
|
15.6
|
1.0
|
|
CA
|
A:ILE68
|
4.1
|
7.5
|
1.0
|
|
CA
|
B:ILE68
|
4.1
|
6.5
|
1.0
|
|
C
|
A:GLY67
|
4.2
|
7.1
|
1.0
|
|
C
|
B:GLY67
|
4.2
|
7.0
|
1.0
|
|
CA
|
A:GLY67
|
4.2
|
7.5
|
1.0
|
|
CA
|
B:GLY67
|
4.2
|
7.4
|
1.0
|
|
H
|
A:SER72
|
4.3
|
7.0
|
0.8
|
|
H
|
B:SER72
|
4.3
|
7.2
|
0.8
|
|
H
|
B:SER72
|
4.4
|
6.2
|
0.2
|
|
H
|
A:SER72
|
4.4
|
6.5
|
0.2
|
|
CG
|
A:GLU48
|
4.4
|
13.0
|
1.0
|
|
CG
|
B:GLU48
|
4.4
|
13.0
|
1.0
|
|
CB
|
A:ILE68
|
4.5
|
8.3
|
1.0
|
|
CA
|
A:SER72
|
4.5
|
5.2
|
0.2
|
|
CA
|
B:SER72
|
4.5
|
4.8
|
0.2
|
|
CB
|
B:ILE68
|
4.5
|
7.2
|
1.0
|
|
HA2
|
A:GLY67
|
4.5
|
9.0
|
1.0
|
|
HA2
|
B:GLY67
|
4.5
|
8.9
|
1.0
|
|
HA
|
A:SER72
|
4.7
|
6.2
|
0.2
|
|
CA
|
B:SER72
|
4.7
|
7.0
|
0.8
|
|
CA
|
A:SER72
|
4.7
|
6.1
|
0.8
|
|
HA
|
B:SER72
|
4.7
|
5.8
|
0.2
|
|
OE2
|
B:GLU48
|
4.8
|
13.8
|
1.0
|
|
OE1
|
A:GLU48
|
4.8
|
13.3
|
1.0
|
|
HB3
|
B:GLU48
|
4.9
|
14.0
|
1.0
|
|
HB3
|
A:GLU48
|
4.9
|
14.7
|
1.0
|
|
N
|
B:SER72
|
4.9
|
5.2
|
0.2
|
|
N
|
A:SER72
|
4.9
|
5.5
|
0.2
|
|
N
|
B:SER72
|
4.9
|
6.0
|
0.8
|
|
N
|
A:SER72
|
4.9
|
5.8
|
0.8
|
|
O
|
A:THR66
|
4.9
|
7.9
|
1.0
|
|
O
|
B:THR66
|
4.9
|
8.0
|
1.0
|
|
N
|
A:GLY69
|
4.9
|
6.4
|
1.0
|
|
N
|
B:GLY69
|
5.0
|
6.0
|
1.0
|
|
Sodium binding site 2 out
of 4 in 4k6o
Go back to
Sodium Binding Sites List in 4k6o
Sodium binding site 2 out
of 4 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na307
b:10.8
occ:1.00
|
HG1
|
B:THR170
|
2.0
|
8.3
|
1.0
|
|
OG1
|
B:THR170
|
2.7
|
6.9
|
1.0
|
|
HG21
|
B:THR170
|
2.7
|
8.8
|
1.0
|
|
O
|
B:ARG167
|
2.8
|
6.3
|
1.0
|
|
O
|
B:HOH404
|
2.8
|
8.3
|
1.0
|
|
O
|
B:ARG174
|
2.8
|
6.6
|
1.0
|
|
HA
|
B:TYR168
|
3.2
|
7.6
|
1.0
|
|
H
|
B:ARG174
|
3.3
|
8.6
|
0.2
|
|
H
|
B:ARG174
|
3.3
|
8.6
|
0.8
|
|
HG22
|
B:VAL175
|
3.3
|
10.7
|
1.0
|
|
HG23
|
B:VAL175
|
3.3
|
10.7
|
1.0
|
|
CG2
|
B:THR170
|
3.4
|
7.3
|
1.0
|
|
HG23
|
B:THR170
|
3.5
|
8.8
|
1.0
|
|
CB
|
B:THR170
|
3.5
|
6.5
|
1.0
|
|
C
|
B:ARG174
|
3.7
|
6.8
|
1.0
|
|
N
|
B:ARG174
|
3.7
|
7.2
|
1.0
|
|
CG2
|
B:VAL175
|
3.8
|
8.9
|
1.0
|
|
HB
|
B:THR170
|
3.8
|
7.8
|
1.0
|
|
C
|
B:ARG167
|
3.9
|
5.8
|
1.0
|
|
HG1
|
B:THR172
|
3.9
|
10.6
|
1.0
|
|
O
|
B:HOH405
|
3.9
|
10.3
|
1.0
|
|
HB3
|
B:PRO163
|
4.0
|
7.5
|
1.0
|
|
HA
|
B:PRO163
|
4.0
|
6.4
|
1.0
|
|
H
|
B:GLY173
|
4.0
|
7.0
|
1.0
|
|
HA2
|
B:GLY173
|
4.0
|
7.9
|
1.0
|
|
CA
|
B:TYR168
|
4.1
|
6.3
|
1.0
|
|
HG22
|
B:THR170
|
4.2
|
8.8
|
1.0
|
|
OG1
|
B:THR172
|
4.2
|
8.8
|
1.0
|
|
HG21
|
B:VAL175
|
4.3
|
10.7
|
1.0
|
|
C
|
B:GLY173
|
4.3
|
6.8
|
1.0
|
|
CA
|
B:ARG174
|
4.3
|
7.8
|
0.2
|
|
CA
|
B:ARG174
|
4.3
|
8.6
|
0.8
|
|
HB3
|
B:TYR162
|
4.3
|
6.7
|
1.0
|
|
HA
|
B:VAL175
|
4.4
|
8.6
|
1.0
|
|
N
|
B:GLY173
|
4.4
|
5.8
|
1.0
|
|
CA
|
B:GLY173
|
4.4
|
6.6
|
1.0
|
|
N
|
B:TYR168
|
4.4
|
5.7
|
1.0
|
|
HD1
|
B:TYR168
|
4.4
|
7.9
|
1.0
|
|
HD3
|
B:PRO163
|
4.5
|
6.3
|
1.0
|
|
N
|
B:VAL175
|
4.6
|
6.4
|
1.0
|
|
C
|
B:TYR168
|
4.6
|
6.1
|
1.0
|
|
O
|
A:HOH418
|
4.6
|
8.7
|
1.0
|
|
CA
|
B:PRO163
|
4.7
|
5.3
|
1.0
|
|
O
|
B:TYR168
|
4.7
|
6.9
|
1.0
|
|
CB
|
B:PRO163
|
4.7
|
6.3
|
1.0
|
|
N
|
B:PRO163
|
4.8
|
4.8
|
1.0
|
|
CA
|
B:VAL175
|
4.8
|
7.2
|
1.0
|
|
CD1
|
B:TYR168
|
4.8
|
6.6
|
1.0
|
|
CA
|
B:THR170
|
4.9
|
6.5
|
1.0
|
|
HA
|
B:ARG174
|
4.9
|
10.3
|
0.8
|
|
HA
|
B:ARG174
|
4.9
|
9.4
|
0.2
|
|
CB
|
B:VAL175
|
4.9
|
8.8
|
1.0
|
|
H
|
B:THR170
|
5.0
|
8.2
|
1.0
|
|
HB2
|
B:ARG167
|
5.0
|
6.7
|
1.0
|
|
Sodium binding site 3 out
of 4 in 4k6o
Go back to
Sodium Binding Sites List in 4k6o
Sodium binding site 3 out
of 4 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na308
b:7.6
occ:0.92
|
HG
|
C:SER72
|
2.2
|
9.3
|
0.8
|
|
HG
|
D:SER72
|
2.2
|
8.2
|
0.8
|
|
HB2
|
D:SER72
|
2.5
|
5.8
|
0.2
|
|
HB2
|
C:SER72
|
2.5
|
4.5
|
0.2
|
|
OE2
|
D:GLU48
|
2.6
|
10.0
|
1.0
|
|
OE2
|
C:GLU48
|
2.6
|
10.2
|
1.0
|
|
HG
|
D:SER72
|
2.8
|
5.1
|
0.2
|
|
OG
|
C:SER72
|
2.8
|
7.8
|
0.8
|
|
O
|
D:ILE68
|
2.8
|
7.5
|
1.0
|
|
OG
|
D:SER72
|
2.8
|
6.9
|
0.8
|
|
O
|
C:ILE68
|
2.8
|
6.9
|
1.0
|
|
HB3
|
D:SER72
|
2.9
|
8.1
|
0.8
|
|
HB3
|
C:SER72
|
3.0
|
8.8
|
0.8
|
|
H
|
D:ILE68
|
3.0
|
8.2
|
1.0
|
|
H
|
C:ILE68
|
3.1
|
8.1
|
1.0
|
|
CB
|
D:SER72
|
3.2
|
4.8
|
0.2
|
|
OG
|
C:SER72
|
3.2
|
3.2
|
0.2
|
|
CB
|
C:SER72
|
3.2
|
3.8
|
0.2
|
|
OG
|
D:SER72
|
3.2
|
4.2
|
0.2
|
|
CB
|
C:SER72
|
3.4
|
7.3
|
0.8
|
|
CB
|
D:SER72
|
3.4
|
6.7
|
0.8
|
|
HB3
|
D:SER72
|
3.4
|
5.8
|
0.2
|
|
HA3
|
C:GLY67
|
3.5
|
9.0
|
1.0
|
|
HA3
|
D:GLY67
|
3.5
|
8.6
|
1.0
|
|
N
|
C:ILE68
|
3.5
|
6.8
|
1.0
|
|
N
|
D:ILE68
|
3.5
|
6.8
|
1.0
|
|
HB3
|
C:SER72
|
3.5
|
4.5
|
0.2
|
|
O
|
C:HOH469
|
3.5
|
6.1
|
0.5
|
|
O
|
C:HOH469
|
3.6
|
6.8
|
0.5
|
|
HB2
|
C:SER72
|
3.7
|
8.8
|
0.8
|
|
HB2
|
D:SER72
|
3.7
|
8.1
|
0.8
|
|
C
|
D:ILE68
|
3.8
|
6.1
|
1.0
|
|
C
|
C:ILE68
|
3.8
|
6.1
|
1.0
|
|
CD
|
D:GLU48
|
3.8
|
11.6
|
1.0
|
|
CD
|
C:GLU48
|
3.8
|
11.6
|
1.0
|
|
HB
|
C:ILE68
|
3.9
|
8.6
|
1.0
|
|
HB
|
D:ILE68
|
3.9
|
9.6
|
1.0
|
|
HG
|
C:SER72
|
3.9
|
3.8
|
0.2
|
|
HG3
|
D:GLU48
|
4.0
|
14.8
|
1.0
|
|
HG3
|
C:GLU48
|
4.0
|
14.6
|
1.0
|
|
CA
|
C:ILE68
|
4.1
|
6.6
|
1.0
|
|
CA
|
D:ILE68
|
4.1
|
6.9
|
1.0
|
|
C
|
C:GLY67
|
4.2
|
6.8
|
1.0
|
|
C
|
D:GLY67
|
4.2
|
6.9
|
1.0
|
|
CA
|
C:GLY67
|
4.2
|
7.5
|
1.0
|
|
CA
|
D:GLY67
|
4.2
|
7.2
|
1.0
|
|
H
|
D:SER72
|
4.3
|
6.8
|
0.8
|
|
H
|
C:SER72
|
4.3
|
6.6
|
0.8
|
|
H
|
C:SER72
|
4.4
|
6.6
|
0.2
|
|
H
|
D:SER72
|
4.4
|
6.2
|
0.2
|
|
CG
|
C:GLU48
|
4.4
|
12.2
|
1.0
|
|
CG
|
D:GLU48
|
4.4
|
12.3
|
1.0
|
|
HA2
|
C:GLY67
|
4.5
|
9.0
|
1.0
|
|
CA
|
D:SER72
|
4.5
|
5.1
|
0.2
|
|
CB
|
C:ILE68
|
4.5
|
7.2
|
1.0
|
|
CB
|
D:ILE68
|
4.5
|
8.0
|
1.0
|
|
CA
|
C:SER72
|
4.6
|
4.8
|
0.2
|
|
HA2
|
D:GLY67
|
4.6
|
8.6
|
1.0
|
|
CA
|
C:SER72
|
4.7
|
6.2
|
0.8
|
|
CA
|
D:SER72
|
4.7
|
6.2
|
0.8
|
|
HA
|
D:SER72
|
4.7
|
6.1
|
0.2
|
|
HA
|
C:SER72
|
4.7
|
5.8
|
0.2
|
|
HB3
|
C:GLU48
|
4.8
|
13.8
|
1.0
|
|
OE1
|
D:GLU48
|
4.8
|
13.4
|
1.0
|
|
OE1
|
C:GLU48
|
4.8
|
13.3
|
1.0
|
|
N
|
D:SER72
|
4.9
|
5.2
|
0.2
|
|
N
|
D:SER72
|
4.9
|
5.6
|
0.8
|
|
N
|
C:SER72
|
4.9
|
5.5
|
1.0
|
|
O
|
D:THR66
|
4.9
|
7.4
|
1.0
|
|
HB3
|
D:GLU48
|
4.9
|
14.0
|
1.0
|
|
O
|
C:THR66
|
4.9
|
7.5
|
1.0
|
|
N
|
D:GLY69
|
4.9
|
6.1
|
1.0
|
|
N
|
C:GLY69
|
5.0
|
6.0
|
1.0
|
|
Sodium binding site 4 out
of 4 in 4k6o
Go back to
Sodium Binding Sites List in 4k6o
Sodium binding site 4 out
of 4 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Na304
b:7.2
occ:0.90
|
HG
|
E:SER72
|
2.2
|
8.6
|
0.8
|
|
HG
|
F:SER72
|
2.2
|
8.4
|
0.8
|
|
HB2
|
F:SER72
|
2.5
|
4.4
|
0.2
|
|
HB2
|
E:SER72
|
2.5
|
3.8
|
0.2
|
|
OE2
|
F:GLU48
|
2.6
|
9.8
|
1.0
|
|
OE2
|
E:GLU48
|
2.6
|
9.3
|
1.0
|
|
OG
|
E:SER72
|
2.8
|
7.2
|
0.8
|
|
HG
|
F:SER72
|
2.8
|
3.0
|
0.2
|
|
O
|
E:ILE68
|
2.8
|
6.6
|
1.0
|
|
OG
|
F:SER72
|
2.8
|
7.0
|
0.8
|
|
O
|
F:ILE68
|
2.8
|
6.3
|
1.0
|
|
HB3
|
F:SER72
|
2.9
|
8.9
|
0.8
|
|
HB3
|
E:SER72
|
2.9
|
8.1
|
0.8
|
|
H
|
E:ILE68
|
3.0
|
7.4
|
1.0
|
|
H
|
F:ILE68
|
3.0
|
7.5
|
1.0
|
|
OG
|
E:SER72
|
3.2
|
2.3
|
0.2
|
|
CB
|
E:SER72
|
3.2
|
3.1
|
0.2
|
|
CB
|
F:SER72
|
3.2
|
3.6
|
0.2
|
|
OG
|
F:SER72
|
3.3
|
2.5
|
0.2
|
|
CB
|
F:SER72
|
3.3
|
7.5
|
0.8
|
|
CB
|
E:SER72
|
3.3
|
6.8
|
0.8
|
|
HB3
|
F:SER72
|
3.5
|
4.4
|
0.2
|
|
N
|
E:ILE68
|
3.5
|
6.2
|
1.0
|
|
HA3
|
E:GLY67
|
3.5
|
8.0
|
1.0
|
|
HB3
|
E:SER72
|
3.5
|
3.8
|
0.2
|
|
HA3
|
F:GLY67
|
3.5
|
8.1
|
1.0
|
|
N
|
F:ILE68
|
3.5
|
6.2
|
1.0
|
|
O
|
E:HOH802
|
3.5
|
5.5
|
0.5
|
|
O
|
E:HOH802
|
3.5
|
6.3
|
0.5
|
|
HB2
|
F:SER72
|
3.7
|
8.9
|
0.8
|
|
HB2
|
E:SER72
|
3.7
|
8.1
|
0.8
|
|
C
|
F:ILE68
|
3.8
|
5.4
|
1.0
|
|
C
|
E:ILE68
|
3.8
|
5.3
|
1.0
|
|
CD
|
F:GLU48
|
3.8
|
11.3
|
1.0
|
|
CD
|
E:GLU48
|
3.8
|
11.4
|
1.0
|
|
HB
|
E:ILE68
|
3.9
|
8.5
|
1.0
|
|
HB
|
F:ILE68
|
3.9
|
8.5
|
1.0
|
|
HG
|
E:SER72
|
3.9
|
2.8
|
0.2
|
|
HG3
|
F:GLU48
|
4.0
|
14.7
|
1.0
|
|
HG3
|
E:GLU48
|
4.0
|
14.0
|
1.0
|
|
CA
|
E:ILE68
|
4.1
|
5.8
|
1.0
|
|
CA
|
F:ILE68
|
4.1
|
5.9
|
1.0
|
|
C
|
E:GLY67
|
4.2
|
5.9
|
1.0
|
|
C
|
F:GLY67
|
4.2
|
6.5
|
1.0
|
|
CA
|
E:GLY67
|
4.2
|
6.7
|
1.0
|
|
CA
|
F:GLY67
|
4.2
|
6.7
|
1.0
|
|
H
|
E:SER72
|
4.3
|
5.9
|
0.8
|
|
H
|
F:SER72
|
4.3
|
6.3
|
0.8
|
|
H
|
F:SER72
|
4.3
|
6.3
|
0.2
|
|
H
|
E:SER72
|
4.3
|
5.9
|
0.2
|
|
CG
|
F:GLU48
|
4.4
|
12.2
|
1.0
|
|
CG
|
E:GLU48
|
4.4
|
11.7
|
1.0
|
|
CB
|
E:ILE68
|
4.5
|
7.1
|
1.0
|
|
CB
|
F:ILE68
|
4.5
|
7.1
|
1.0
|
|
HA2
|
E:GLY67
|
4.5
|
8.0
|
1.0
|
|
CA
|
E:SER72
|
4.5
|
4.5
|
0.2
|
|
CA
|
F:SER72
|
4.5
|
4.5
|
0.2
|
|
HA2
|
F:GLY67
|
4.6
|
8.1
|
1.0
|
|
CA
|
F:SER72
|
4.7
|
6.0
|
0.8
|
|
CA
|
E:SER72
|
4.7
|
6.2
|
0.8
|
|
HA
|
E:SER72
|
4.7
|
5.5
|
0.2
|
|
OE1
|
F:GLU48
|
4.8
|
12.8
|
1.0
|
|
HA
|
F:SER72
|
4.8
|
5.4
|
0.2
|
|
OE1
|
E:GLU48
|
4.8
|
12.5
|
1.0
|
|
HB3
|
E:GLU48
|
4.8
|
13.1
|
1.0
|
|
HB3
|
F:GLU48
|
4.8
|
12.8
|
1.0
|
|
N
|
F:SER72
|
4.9
|
5.2
|
1.0
|
|
N
|
E:SER72
|
4.9
|
4.9
|
1.0
|
|
N
|
F:GLY69
|
4.9
|
5.3
|
1.0
|
|
N
|
E:GLY69
|
5.0
|
5.2
|
1.0
|
|
O
|
F:THR66
|
5.0
|
7.1
|
1.0
|
|
O
|
E:THR66
|
5.0
|
7.1
|
1.0
|
|
Reference:
I.I.Prokofev,
A.A.Lashkov,
A.G.Gabdoulkhakov,
M.V.Dontsova,
T.A.Seregina,
A.S.Mironov,
C.Betzel,
A.M.Mikhailov.
Crystallization and Preliminary X-Ray Study of Vibrio Cholerae Uridine Phosphorylase in Complex with 6-Methyluracil Acta Crystallogr.,Sect.F V. 70 60 2014.
ISSN: ESSN 1744-3091
DOI: 10.1107/S2053230X13031877
Page generated: Tue Dec 15 06:49:06 2020
|
