Sodium in PDB 4jzy: Crystal Structures of Drosophila Cryptochrome

The structure of Crystal Structures of Drosophila Cryptochrome, PDB code: 4jzy was solved by A.Czarna, E.Wolf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.87 / 2.34
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	154.160, 81.460, 116.680, 90.00, 120.19, 90.00
R / Rfree (%)	17.2 / 22.2

The binding sites of Sodium atom in the Crystal Structures of Drosophila Cryptochrome (pdb code 4jzy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structures of Drosophila Cryptochrome, PDB code: 4jzy:

Sodium binding site 1 out of 1 in the Crystal Structures of Drosophila Cryptochrome


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structures of Drosophila Cryptochrome within 5.0Å range: probe atom residue distance (Å) B Occ B:Na602 b:27.9 occ:1.00 O2 B:FAD601 2.8 23.2 1.0 O B:HOH803 2.8 21.5 1.0 O B:SER267 2.8 19.4 1.0 O2B B:FAD601 2.9 20.7 1.0 CA B:SER267 3.5 20.8 1.0 C B:SER267 3.5 21.7 1.0 CB B:LEU270 3.7 16.9 1.0 C2B B:FAD601 3.7 20.5 1.0 CB B:SER267 3.8 21.0 1.0 OD2 B:ASP412 3.9 20.9 1.0 C2 B:FAD601 4.0 22.4 1.0 O3B B:FAD601 4.0 27.0 1.0 N B:ARG271 4.0 20.1 1.0 C B:LEU270 4.5 19.7 1.0 C3B B:FAD601 4.5 21.5 1.0 OD1 B:ASP412 4.5 22.0 1.0 CB B:ARG271 4.5 18.7 1.0 CG B:ASP412 4.6 23.4 1.0 CD1 B:LEU270 4.6 15.0 1.0 CD B:ARG315 4.6 17.3 1.0 CA B:LEU270 4.6 20.2 1.0 N3 B:FAD601 4.6 24.7 1.0 NE B:ARG315 4.6 22.2 1.0 CA B:ARG271 4.6 21.8 1.0 CB B:ASP410 4.6 18.7 1.0 CG B:LEU270 4.7 19.8 1.0 N B:ALA268 4.8 21.3 1.0 N B:SER267 4.8 22.7 1.0 O B:MET266 4.9 23.9 1.0 OG B:SER267 4.9 21.9 1.0 N1 B:FAD601 4.9 20.2 1.0 N B:LEU270 4.9 21.2 1.0 C1B B:FAD601 5.0 20.0 1.0

A.Czarna, A.Berndt, H.R.Singh, A.Grudziecki, A.G.Ladurner, G.Timinszky, A.Kramer, E.Wolf. Structures of Drosophila Cryptochrome and Mouse CRYPTOCHROME1 Provide Insight Into Circadian Function. Cell(Cambridge,Mass.) V. 153 1394 2013.
ISSN: ISSN 0092-8674
PubMed: 23746849
DOI: 10.1016/J.CELL.2013.05.011