Sodium in PDB 4kbo: Crystal Structure of the Human Mortalin (GRP75) Atpase Domain in the Apo Form

The structure of Crystal Structure of the Human Mortalin (GRP75) Atpase Domain in the Apo Form, PDB code: 4kbo was solved by J.Amick, R.C.Page, J.C.Nix, S.Misra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.38 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.197, 67.812, 120.769, 90.00, 90.00, 90.00
R / Rfree (%)	21.8 / 27.1

The binding sites of Sodium atom in the Crystal Structure of the Human Mortalin (GRP75) Atpase Domain in the Apo Form (pdb code 4kbo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human Mortalin (GRP75) Atpase Domain in the Apo Form, PDB code: 4kbo:

Sodium binding site 1 out of 1 in the Crystal Structure of the Human Mortalin (GRP75) Atpase Domain in the Apo Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human Mortalin (GRP75) Atpase Domain in the Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:32.1 occ:1.00 O A:HOH607 2.5 34.3 1.0 O A:HOH606 2.9 41.6 1.0 O A:HOH604 3.0 24.8 1.0 OG1 A:THR62 3.2 30.7 1.0 N A:THR62 3.3 23.1 1.0 CB A:THR62 3.9 29.5 1.0 NZ A:LYS121 3.9 30.2 1.0 CA A:GLY61 3.9 27.2 1.0 C A:GLY61 4.1 27.8 1.0 CA A:THR62 4.2 27.2 1.0 OE1 A:GLU222 4.4 37.0 1.0 OE2 A:GLU222 4.4 38.0 1.0 OG1 A:THR249 4.6 36.4 1.0 CE A:LYS121 4.6 25.8 1.0 CD A:LYS121 4.8 23.7 1.0 CD A:GLU222 4.8 38.4 1.0 CG2 A:THR249 4.9 27.3 1.0

J.Amick, S.E.Schlanger, C.Wachnowsky, M.A.Moseng, C.C.Emerson, M.Dare, W.I.Luo, S.S.Ithychanda, J.C.Nix, J.A.Cowan, R.C.Page, S.Misra. Crystal Structure of the Nucleotide-Binding Domain of Mortalin, the Mitochondrial HSP70 Chaperone. Protein Sci. V. 23 833 2014.
ISSN: ISSN 0961-8368
PubMed: 24687350
DOI: 10.1002/PRO.2466