Sodium in PDB, part 93 (files: 3681-3720),
PDB 4blw-4c44
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 3681-3720 (PDB 4blw-4c44).
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4blw (Na: 2) - Crystal Structure of Escherichia Coli 23S Rrna (A2030-N6)- Methyltransferase Rlmj in Complex with S- Adenosylhomocysteine (Adohcy) and Adenosine Monophosphate ( Amp)
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4bmb (Na: 1) - Crystal Structure of the N Terminal Domain of Human Galectin 8
Other atoms:
Zn (1);
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4bn4 (Na: 1) - Structure of Human SIRT3 in Complex with Adp-Ribose
Other atoms:
Zn (1);
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4boh (Na: 2) - Madanins (Merops I53) Are Cleaved By Thrombin and Factor Xa
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4bow (Na: 1) - Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose
Other atoms:
Ca (2);
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4bqc (Na: 2) - Crystal Structure of the FN5 and FN6 Domains of NEO1 Bound to Sos
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4bqp (Na: 1) - Mtb Inha Complex with Methyl-Thiazole Compound 7
Other atoms:
F (12);
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4br6 (Na: 6) - Crystal Structure of Chaetomium Thermophilum Mnsod
Other atoms:
Mn (4);
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4bre (Na: 1) - Legionella Pneumophila NTPDASE1 Crystal Form II (Closed) in Complex with Transition State Mimic Adenosine 5' Phosphovanadate
Other atoms:
Mg (2);
V (2);
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4brf (Na: 1) - Legionella Pneumophila NTPDASE1 Crystal Form II (Closed) in Complex with A Distorted Orthomolybdate Ion and Amp
Other atoms:
Mo (4);
Mg (6);
Cl (2);
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4brg (Na: 1) - Legionella Pneumophila NTPDASE1 Crystal Form II (Closed) in Complex with Mg Gmppnp
Other atoms:
Mg (2);
Cl (2);
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4brs (Na: 3) - Structure of Wild Type PHAZ7 Phb Depolymerase
Other atoms:
Mg (1);
Cl (1);
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4bv3 (Na: 1) - Crystal Structure of SIRT3 in Complex with the Inhibitor Ex-527 and Nad
Other atoms:
Zn (1);
Cl (2);
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4bvh (Na: 1) - Crystal Structure of Human SIRT3 in Complex with the Inhibitor Ex-527 and 2'-O-Acetyl-Adp-Ribose
Other atoms:
Zn (3);
Cl (5);
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4bvj (Na: 3) - Structure of Y105A Mutant of PHAZ7 Phb Depolymerase
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4bvn (Na: 2) - Ultra-Thermostable BETA1-Adrenoceptor with Cyanopindolol Bound
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4bvo (Na: 2) - Legionella Pneumophila NTPDASE1 Crystal Form VI (Part-Open) in Complex with Polytungstate Pom-1
Other atoms:
W (12);
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4bvp (Na: 1) - Legionella Pneumophila NTPDASE1 Crystal Form II (Closed) in Complex with Heptamolybdate and Octamolybdate
Other atoms:
Mo (46);
Mg (5);
Cl (2);
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4bxw (Na: 1) - Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis
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4by4 (Na: 1) - Crystal Structure of Drosophila FRQ2
Other atoms:
Ca (6);
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4by5 (Na: 1) - Crystal Structure of Drosophila FRQ2
Other atoms:
Ca (12);
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4bym (Na: 2) - Structure of PHAZ7 Phb Depolymerase Y105E Mutant
Other atoms:
Cl (1);
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4bz1 (Na: 4) - Structure of Dengue Virus Ediii in Complex with Fab 3E31
Other atoms:
Zn (1);
Cl (2);
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4bz2 (Na: 8) - Structure of Dengue Virus Ediii in Complex with Fab 2D73
Other atoms:
Cl (3);
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4bz3 (Na: 2) - Crystal Structure of the Metallo-Beta-Lactamase Vim-2
Other atoms:
Zn (6);
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4c0j (Na: 1) - Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains in the Apo State (Apo-Miros)
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4c0k (Na: 1) - Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains Bound to One Calcium Ion (Ca-Miros)
Other atoms:
Ca (1);
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4c0l (Na: 1) - Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains Bound to One Magnesium Ion and Mg:Gdp (Mggdp-Miros)
Other atoms:
Mg (2);
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4c10 (Na: 6) - Cryo-Em Reconstruction of Empty Enterovirus 71 in Complex with A Neutralizing Antibody E19
Other atoms:
Cl (1);
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4c1d (Na: 2) - Crystal Structure of the Metallo-Beta-Lactamase Vim-2 with L-Captopril
Other atoms:
Zn (6);
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4c1e (Na: 2) - Crystal Structure of the Metallo-Beta-Lactamase Vim-2 with D-Captopril
Other atoms:
Zn (6);
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4c1o (Na: 1) - Geobacillus Thermoglucosidasius Gh Family 52 Xylosidase
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4c1p (Na: 1) - Geobacillus Thermoglucosidasius Gh Family 52 Xylosidase
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4c2u (Na: 2) - Crystal Structure of Deinococcus Radiodurans Uvrd in Complex with Dna, Form 1
Other atoms:
Mg (2);
-
4c3u (Na: 1) - Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, Cs Derivative
Other atoms:
Cs (10);
Ca (1);
Cl (6);
-
4c3v (Na: 3) - Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak
Other atoms:
Ca (1);
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4c3w (Na: 1) - Vanadium(IV)-Picolinate Complexed with Lysozyme
Other atoms:
Cl (2);
V (1);
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4c3x (Na: 4) - Crystal Structure of 3-Ketosteroid DELTA1-Dehydrogenase From Rhodococcus Erythropolis SQ1
Other atoms:
Cl (8);
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4c3y (Na: 4) - Crystal Structure of 3-Ketosteroid DELTA1-Dehydrogenase From Rhodococcus Erythropolis SQ1 in Complex with 1,4- Androstadiene-3,17-Dione
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4c44 (Na: 1) - Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana
Other atoms:
Fe (1);
Page generated: Thu Dec 28 11:18:18 2023
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