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Sodium in PDB 4c44: Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana

Protein crystallography data

The structure of Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana, PDB code: 4c44 was solved by N.Mukhi, S.Dhindwal, P.Kumar, J.Kaur, S.Kundu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.20 / 2.65
Space group P 43 3 2
Cell size a, b, c (Å), α, β, γ (°) 122.085, 122.085, 122.085, 90.00, 90.00, 90.00
R / Rfree (%) 20.269 / 25.21

Other elements in 4c44:

The structure of Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana also contains other interesting chemical elements:

Iron (Fe) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana (pdb code 4c44). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana, PDB code: 4c44:

Sodium binding site 1 out of 1 in 4c44

Go back to Sodium Binding Sites List in 4c44
Sodium binding site 1 out of 1 in the Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Truncated Plant Hemoglobin From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1152

b:23.5
occ:1.00
N A:LEU94 3.4 27.4 1.0
N A:ALA93 3.4 26.8 1.0
CA A:ALA93 3.7 26.1 1.0
CG A:LEU94 3.9 25.2 1.0
CB A:PRO92 4.0 25.6 1.0
C A:ALA93 4.1 27.0 1.0
C A:PRO92 4.2 26.2 1.0
CB A:LEU94 4.2 26.6 1.0
CA A:LEU94 4.4 26.5 1.0
CD1 A:LEU94 4.6 25.8 1.0
CA A:PRO92 4.7 26.6 1.0
O A:HOH2012 4.7 19.0 1.0
CG A:PRO92 4.9 26.4 1.0
CD2 A:LEU94 4.9 24.1 1.0
O A:PRO92 4.9 27.1 1.0
O A:HOH2029 5.0 3.7 0.5

Reference:

N.Mukhi, S.Dhindwal, P.Kumar, J.Kaur, S.Kundu. X-Ray Crystallographic Structural Characteristics of Truncated Hemoglobin From Arabidopsis Thaliana To Be Published.
Page generated: Tue Dec 15 06:35:14 2020

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