Sodium in PDB 4c0j: Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains in the Apo State (Apo-Miros)

The structure of Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains in the Apo State (Apo-Miros), PDB code: 4c0j was solved by J.L.Klosowiak, P.J.Focia, Z.Wawrzak, S.Chakravarthy, E.C.Landahl, D.M.Freymann, S.E.Rice, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.59 / 2.82
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.930, 81.930, 155.821, 90.00, 90.00, 120.00
R / Rfree (%)	22.47 / 26.17

The binding sites of Sodium atom in the Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains in the Apo State (Apo-Miros) (pdb code 4c0j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains in the Apo State (Apo-Miros), PDB code: 4c0j:

Sodium binding site 1 out of 1 in the Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains in the Apo State (Apo-Miros)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Drosophila Miro Ef Hand and Cgtpase Domains in the Apo State (Apo-Miros) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1614 b:38.3 occ:1.00 OE2 A:GLU234 2.5 22.3 1.0 OD1 A:ASP227 2.5 36.6 1.0 O A:LEU229 2.8 35.6 1.0 ND2 A:ASN231 2.9 34.8 1.0 OD2 A:ASP225 3.1 42.8 1.0 OD1 A:ASP223 3.1 37.8 1.0 CG A:ASP227 3.4 35.6 1.0 CB A:ASP225 3.4 31.4 1.0 OD2 A:ASP227 3.5 35.9 1.0 CG A:ASP225 3.6 37.3 1.0 CD A:GLU234 3.7 22.0 1.0 N A:ASP225 3.8 37.7 1.0 C A:LEU229 3.8 34.6 1.0 CG A:ASN231 4.1 35.9 1.0 N A:ILE224 4.2 25.4 1.0 CA A:ASP225 4.2 31.4 1.0 OE1 A:GLU234 4.3 26.8 1.0 N A:ASN231 4.3 28.8 1.0 CG A:ASP223 4.4 33.9 1.0 CG1 A:ILE224 4.4 20.9 1.0 C A:ASP223 4.6 28.2 1.0 CA A:ASP223 4.6 28.2 1.0 C A:ILE224 4.7 31.2 1.0 OD1 A:ASP225 4.7 33.8 1.0 CA A:LEU229 4.7 33.2 1.0 N A:LEU230 4.7 28.7 1.0 CB A:ASN231 4.7 29.3 1.0 N A:LEU229 4.7 37.3 1.0 CA A:LEU230 4.7 24.9 1.0 CB A:ASP227 4.8 34.9 1.0 CB A:LEU229 4.8 31.7 1.0 CG A:GLU234 4.8 27.5 1.0 N A:ASP227 4.9 34.2 1.0 CA A:ILE224 4.9 26.4 1.0 N A:GLY226 4.9 32.9 1.0 C A:ASP225 4.9 33.2 1.0

J.L.Klosowiak, P.J.Focia, S.Chakravarthy, E.C.Landahl, D.M.Freymann, S.E.Rice. Structural Coupling of the Ef Hand and C-Terminal Gtpase Domains in the Mitochondrial Protein Miro. Embo Rep. V. 14 968 2013.
ISSN: ISSN 1469-221X
PubMed: 24071720
DOI: 10.1038/EMBOR.2013.151