Sodium in PDB 4bxw: Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis

The structure of Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis, PDB code: 4bxw was solved by B.C.Lechtenberg, T.A.Murray-Rust, D.J.D.Johnson, T.E.Adams, S.Krishnaswamy, R.M.Camire, J.A.Huntington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	73.20 / 2.71
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	179.310, 179.310, 179.310, 90.00, 90.00, 90.00
R / Rfree (%)	15.537 / 23.308

The binding sites of Sodium atom in the Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis (pdb code 4bxw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis, PDB code: 4bxw:

Sodium binding site 1 out of 1 in the Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1412 b:60.6 occ:1.00 O A:TYR350 2.4 35.6 1.0 O A:ARG388 2.7 39.0 1.0 O A:LYS391 3.1 31.3 1.0 O A:ASP351 3.2 44.8 1.0 C A:TYR350 3.5 37.1 1.0 O A:HOH2077 3.5 44.7 1.0 O A:HOH2080 3.5 45.5 1.0 C A:ARG388 3.6 35.4 1.0 C A:ASP351 3.7 38.6 1.0 O A:LEU353 3.7 36.4 1.0 O A:HOH2079 3.8 43.1 1.0 N A:ARG388 3.9 29.8 1.0 C A:ALA387 4.0 32.1 1.0 CA A:ALA387 4.2 32.1 1.0 N A:ASP351 4.3 40.7 1.0 C A:LYS391 4.3 31.0 1.0 N A:THR352 4.3 37.5 1.0 CA A:TYR350 4.3 33.6 1.0 CA A:ASP351 4.3 39.5 1.0 N A:TYR350 4.4 30.6 1.0 CA A:ARG388 4.4 32.1 1.0 N A:LYS391 4.5 28.7 1.0 N A:ASN389 4.5 36.1 1.0 O A:ALA387 4.5 31.6 1.0 CB A:TYR350 4.6 30.9 1.0 C A:LEU353 4.6 35.2 1.0 N A:GLY390 4.6 36.5 1.0 CA A:THR352 4.6 34.9 1.0 N A:LEU353 4.7 32.6 1.0 CA A:ASN389 4.7 33.2 1.0 C A:THR352 4.7 33.7 1.0 CA A:LYS391 5.0 28.3 1.0 CB A:ALA387 5.0 30.1 1.0

B.C.Lechtenberg, T.A.Murray-Rust, D.J.Johnson, T.E.Adams, S.Krishnaswamy, R.M.Camire, J.A.Huntington. Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis. Blood V. 122 2777 2013.
ISSN: ISSN 0006-4971
PubMed: 23869089
DOI: 10.1182/BLOOD-2013-06-511733