Sodium in PDB, part 50 (files: 1961-2000),
PDB 2yfa-2zgb
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 1961-2000 (PDB 2yfa-2zgb).
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2yfa (Na: 2) - X-Ray Structure of Mcps Ligand Binding Domain in Complex with Malate
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2yfo (Na: 27) - Galactosidase Domain of Alpha-Galactosidase-Sucrose Kinase, Agask, in Complex with Galactose
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2ygh (Na: 4) - Sam-I Riboswitch with A G2NA Mutation in the Kink Turn in Complex with S-Adenosylmethionine
Other atoms:
K (1);
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2ygj (Na: 2) - Methanobactin MB4
Other atoms:
Cu (1);
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2ygm (Na: 2) - The X-Ray Crystal Structure of Tandem CBM51 Modules of SP3GH98, the Family 98 Glycoside Hydrolase From Streptococcus Pneumoniae SP3-BS71, in Complex with the Blood Group B Antigen
Other atoms:
Ca (2);
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2ygo (Na: 1) - Wif Domain-Egf-Like Domain 1 of Human Wnt Inhibitory Factor 1 in Complex with 1,2-Dipalmitoylphosphatidylcholine
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2yig (Na: 3) - MMP13 in Complex with A Novel Selective Non Zinc Binding Inhibitor
Other atoms:
Zn (4);
Ca (4);
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2yj7 (Na: 1) - Crystal Structure of A Hyperstable Protein From the Precambrian Period
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2yme (Na: 1) - Crystal Structure of A Mutant Binding Protein (5HTBP-Achbp) in Complex with Granisetron
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2yms (Na: 1) - Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif
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2ymw (Na: 4) - Structure of the Epsilon-Lysine Oxidase From Marinomonas Mediterranea
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2ynq (Na: 5) - Crystal Structure of Geobacillus Thermodenitrificans Essb Extracellular Fragment
Other atoms:
Cl (3);
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2ynx (Na: 1) - Crystal Structure of Ancestral Thioredoxin Relative to Last Archaea Common Ancestor (Laca) From the Precambrian Period
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2yoi (Na: 3) - Crystal Structure of Ancestral Thioredoxin Relative to Last Eukaryotes Common Ancestor (Leca) From the Precambrian Period
Other atoms:
Mg (2);
Cl (1);
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2ypd (Na: 2) - Crystal Structure of the Jumonji Domain of Human Jumonji Domain Containing 1C Protein
Other atoms:
Hg (11);
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2yxt (Na: 2) - Human Pyridoxal Kinase
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2yxu (Na: 2) - Human Pyridoxal Kinase
Other atoms:
Mg (2);
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2yyk (Na: 1) - Crystal Structure of the Mutant of Hpab (T198I, A276G, and R466H)
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2z12 (Na: 1) - Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration
Other atoms:
Cl (4);
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2z18 (Na: 1) - Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution
Other atoms:
Cl (4);
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2z19 (Na: 1) - Phase Transition of Monoclinic Lysozyme Crystal Soaked in A Saturated Nacl Solution
Other atoms:
Cl (5);
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2z1n (Na: 2) - Crystal Structure of APE0912 From Aeropyrum Pernix K1
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2z2f (Na: 1) - X-Ray Crystal Structure of Bovine Stomach Lysozyme
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2z3b (Na: 12) - Crystal Structure of Bacillus Subtilis Codw, A Non- Canonical Hslv-Like Peptidase with An Impaired Catalytic Apparatus
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2z4o (Na: 1) - Wild Type Hiv-1 Protease with Potent Antiviral Inhibitor Grl-98065
Other atoms:
Cl (2);
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2z5d (Na: 1) - Human Ubiquitin-Conjugating Enzyme E2 H
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2z68 (Na: 2) - Crystal Structure of An Artificial Metalloprotein: Cr[N- Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]/Wild Type Heme Oxygenase
Other atoms:
Cr (2);
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2z8f (Na: 3) - The Galacto-N-Biose-/Lacto-N-Biose I-Binding Protein (Gl- Bp) of the Abc Transporter From Bifidobacterium Longum in Complex with Lacto-N-Tetraose
Other atoms:
Zn (5);
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2zak (Na: 2) - Orthorhombic Crystal Structure of Precursor E. Coli Isoaspartyl Peptidase/L-Asparaginase (Ecaiii) with Active- Site T179A Mutation
Other atoms:
Cl (2);
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2zal (Na: 2) - Crystal Structure of E. Coli Isoaspartyl Aminopeptidase/L- Asparaginase in Complex with L-Aspartate
Other atoms:
Cl (1);
Ca (5);
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2zc9 (Na: 2) - Thrombin in Complex with Inhibitor
Other atoms:
Cl (1);
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2zda (Na: 2) - Exploring Thrombin S1 Pocket
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2zdv (Na: 2) - Exploring Thrombin S1 Pocket
Other atoms:
F (1);
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2zf0 (Na: 2) - Exploring Thrombin S1 Pocket
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2zff (Na: 2) - Exploring Thrombin S1-Pocket
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2zfp (Na: 2) - Thrombin Inibition
Other atoms:
Cl (1);
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2zfq (Na: 2) - Exploring Thrombin S3 Pocket
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2zfr (Na: 2) - Exploring Thrombin S3 Pocket
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2zg0 (Na: 2) - Exploring Thrombin S3 Pocket
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2zgb (Na: 2) - Thrombin Inhibition
Other atoms:
Cl (1);
Page generated: Thu Dec 28 11:15:02 2023
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