Sodium in PDB 2ynx: Crystal Structure of Ancestral Thioredoxin Relative to Last Archaea Common Ancestor (Laca) From the Precambrian Period

Enzymatic activity of Crystal Structure of Ancestral Thioredoxin Relative to Last Archaea Common Ancestor (Laca) From the Precambrian Period

Protein crystallography data

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 2ynx

Sodium Binding Sites List in 2ynx

Sodium binding site 1 out of 1 in the Crystal Structure of Ancestral Thioredoxin Relative to Last Archaea Common Ancestor (Laca) From the Precambrian Period


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ancestral Thioredoxin Relative to Last Archaea Common Ancestor (Laca) From the Precambrian Period within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1107 b:33.4 occ:1.00 HG3 B:LYS45 2.7 30.5 0.5 O B:GLU41 2.9 15.6 1.0 HG3 B:GLU41 2.9 37.3 0.4 H1 B:SER1 2.9 57.7 1.0 HA B:SER1 3.0 44.4 1.0 H3 B:SER1 3.0 57.7 1.0 HZ3 B:LYS45 3.0 49.8 0.5 OE1 B:GLU41 3.1 31.3 0.6 HB1 B:ALA44 3.1 15.5 1.0 OE1 B:GLU41 3.2 34.5 0.4 CD B:GLU41 3.3 36.7 0.4 HA B:GLU41 3.3 20.8 0.4 HA B:GLU41 3.3 11.2 0.6 N B:SER1 3.3 48.1 1.0 HB3 B:GLU41 3.3 30.2 0.6 O B:HOH2003 3.5 33.6 1.0 CG B:GLU41 3.5 31.1 0.4 CG B:LYS45 3.5 25.4 0.5 CA B:SER1 3.6 37.0 1.0 HB2 B:LYS45 3.6 16.3 0.5 HE3 B:LYS45 3.6 46.7 0.5 HG2 B:LYS45 3.6 30.5 0.5 C B:GLU41 3.7 16.0 1.0 H B:LYS45 3.7 16.7 0.5 NZ B:LYS45 3.8 41.5 0.5 H B:LYS45 3.8 17.1 0.5 OE2 B:GLU41 3.8 36.6 0.4 CA B:GLU41 3.8 9.4 0.6 CA B:GLU41 3.8 17.4 0.4 H B:VAL2 3.9 19.9 1.0 HZ2 B:LYS45 4.0 49.8 0.5 CB B:ALA44 4.0 12.9 1.0 CB B:GLU41 4.0 25.1 0.6 CE B:LYS45 4.1 38.9 0.5 N B:LYS45 4.1 13.9 0.5 HB2 B:ALA44 4.1 15.5 1.0 N B:LYS45 4.1 14.2 0.5 HG22 B:VAL2 4.1 26.1 1.0 HG21 B:VAL2 4.2 26.1 1.0 CD B:GLU41 4.2 35.7 0.6 H2 B:SER1 4.2 57.7 1.0 CB B:GLU41 4.2 26.8 0.4 C B:SER1 4.3 23.9 1.0 N B:VAL2 4.3 16.6 1.0 HG2 B:GLU41 4.3 37.3 0.4 CD B:LYS45 4.4 30.8 0.5 CB B:LYS45 4.4 13.6 0.5 HZ1 B:LYS45 4.5 49.8 0.5 O B:HOH2001 4.5 56.5 1.0 CB B:LYS45 4.5 14.1 0.5 HA B:LYS45 4.5 19.0 0.5 HA B:LYS45 4.6 19.0 0.5 HB3 B:ALA44 4.6 15.5 1.0 CG2 B:VAL2 4.6 21.8 1.0 C B:ALA44 4.6 15.2 1.0 CA B:LYS45 4.6 15.8 0.5 HB2 B:GLU41 4.6 32.1 0.4 HB3 B:LYS45 4.6 16.3 0.5 CA B:LYS45 4.7 15.9 0.5 HB2 B:LYS45 4.7 16.9 0.5 CG B:GLU41 4.7 27.7 0.6 HB2 B:GLU41 4.8 30.2 0.6 CA B:ALA44 4.8 10.9 1.0 HD2 B:LYS45 4.8 36.9 0.5 HB2 B:SER1 4.8 49.7 1.0 CB B:SER1 4.9 41.4 1.0 HA B:GLU42 4.9 17.9 0.3 N B:GLU42 4.9 13.5 1.0 H B:ALA44 4.9 12.6 1.0 HE2 B:LYS45 5.0 46.7 0.5 HB3 B:GLU41 5.0 32.1 0.4

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