Sodium in PDB 2yms: Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif

The structure of Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif, PDB code: 2yms was solved by K.Zeth, R.Albrecht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.206 / 2.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	88.570, 83.450, 57.370, 90.00, 118.94, 90.00
R / Rfree (%)	18.7 / 23.95

The binding sites of Sodium atom in the Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif (pdb code 2yms). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif, PDB code: 2yms:

Sodium binding site 1 out of 1 in the Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1323 b:74.2 occ:1.00 OD2 C:ASP292 2.4 74.8 1.0 O C:ASP292 2.9 55.6 1.0 O C:HOH2008 3.0 69.2 1.0 OH C:TYR297 3.0 53.9 1.0 CG C:ASP292 3.5 69.8 1.0 NH1 C:ARG295 3.6 61.3 1.0 C C:ASP292 3.6 58.1 1.0 CZ C:TYR297 4.0 50.7 1.0 CB C:ASP292 4.0 62.7 1.0 CE2 C:TYR297 4.0 48.0 1.0 N C:GLY293 4.3 59.6 1.0 CA C:GLY293 4.3 61.2 1.0 CA C:ASP292 4.5 53.9 1.0 N C:ASN294 4.6 65.6 1.0 OD1 C:ASP292 4.6 67.9 1.0 CG1 B:VAL117 4.8 52.5 1.0 CZ C:ARG295 4.8 63.4 1.0 N C:ARG295 4.9 56.6 1.0 C C:GLY293 5.0 64.1 1.0 CB C:ARG295 5.0 51.7 1.0 O B:HOH2003 5.0 57.0 1.0

R.Albrecht, K.Zeth. Structure and Assembly of A B-Propeller with Nine Blades and A New Conserved Repetitive Sequence Motif To Be Published.