Sodium in PDB 2z2f: X-Ray Crystal Structure of Bovine Stomach Lysozyme

All present enzymatic activity of X-Ray Crystal Structure of Bovine Stomach Lysozyme:
3.2.1.17;

The structure of X-Ray Crystal Structure of Bovine Stomach Lysozyme, PDB code: 2z2f was solved by D.Akieda, Y.Nonaka, N.Watanabe, I.Tanaka, M.Kamiya, T.Aizawa, K.Nitta, M.Demura, K.Kawano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	17.94 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	31.257, 56.065, 64.050, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 22.1

The binding sites of Sodium atom in the X-Ray Crystal Structure of Bovine Stomach Lysozyme (pdb code 2z2f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Crystal Structure of Bovine Stomach Lysozyme, PDB code: 2z2f:

Sodium binding site 1 out of 1 in the X-Ray Crystal Structure of Bovine Stomach Lysozyme


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of Bovine Stomach Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2001 b:6.5 occ:1.00 O A:SER61 2.3 6.6 1.0 O A:CYS65 2.3 6.4 1.0 O A:VAL74 2.4 7.6 1.0 O A:HOH2002 2.4 6.6 1.0 O A:HOH2008 2.4 8.4 1.0 C A:VAL74 3.3 7.0 1.0 C A:CYS65 3.4 6.2 1.0 C A:SER61 3.4 6.4 1.0 CB A:ALA73 3.5 8.6 1.0 N A:VAL74 3.8 7.2 1.0 CA A:ASN66 3.8 7.0 0.5 CA A:ASN66 3.8 6.3 0.5 N A:ASN66 4.0 6.6 0.5 N A:ASN66 4.0 6.2 0.5 CA A:VAL74 4.1 7.3 1.0 CA A:SER61 4.2 6.2 1.0 N A:ASP75 4.2 6.6 1.0 C A:ALA73 4.2 8.4 1.0 C A:LYS62 4.3 6.6 1.0 O A:LYS62 4.3 6.6 1.0 N A:CYS65 4.3 5.8 1.0 CA A:ASP75 4.4 5.9 1.0 CA A:ALA73 4.4 8.8 1.0 OD1 A:ASN66 4.4 6.2 0.5 O A:HOH2011 4.5 8.9 1.0 N A:LYS62 4.5 6.3 1.0 CA A:CYS65 4.5 6.3 1.0 CB A:SER61 4.5 6.2 1.0 N A:ASP67 4.5 6.9 1.0 CA A:LYS62 4.5 6.5 1.0 N A:TRP63 4.6 6.4 1.0 CB A:ASP75 4.6 6.2 1.0 CB A:ASN66 4.6 7.9 0.5 CB A:ASN66 4.7 6.7 0.5 C A:ASN66 4.7 6.9 0.5 C A:ASN66 4.7 6.4 0.5 N A:TRP64 4.9 5.6 1.0 O A:ALA73 4.9 8.3 1.0 O A:HOH2148 5.0 18.7 1.0

D.Akieda, Y.Nonaka, N.Watanabe, I.Tanaka, M.Kamiya, T.Aizawa, K.Nitta, M.Demura, K.Kawano. Stability of Bovine Stomach Lysozyme in Acidic Condition To Be Published.